Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors von Feng, Siqian, Rastogi, Chaitanya, Loker, Ryan, Glassford, William J., Tomas Rube, H., Bussemaker, Harmen J., Mann, Richard S.

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The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer von Bell, Robert J. A., Rube, H. Tomas, Kreig, Alex, Mancini, Andrew, Fouse, Shaun D., Nagarajan, Raman P., Choi, Serah, Hong, Chibo, He, Daniel, Pekmezci, Melike, Wiencke, John K., Wrensch, Margaret R., Chang, Susan M., Walsh, Kyle M., Myong, Sua, Song, Jun S., Costello, Joseph F.

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Measuring DNA mechanics on the genome scale von Basu, Aakash, Bobrovnikov, Dmitriy G., Qureshi, Zan, Kayikcioglu, Tunc, Ngo, Thuy T. M., Ranjan, Anand, Eustermann, Sebastian, Cieza, Basilio, Morgan, Michael T., Hejna, Miroslav, Rube, H. Tomas, Hopfner, Karl-Peter, Wolberger, Cynthia, Song, Jun S., Ha, Taekjip

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Understanding TERT Promoter Mutations: A Common Path to Immortality von Bell, Robert J A, Rube, H Tomas, Xavier-Magalhães, Ana, Costa, Bruno M, Mancini, Andrew, Song, Jun S, Costello, Joseph F

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AsCas12a ultra nuclease facilitates the rapid generation of therapeutic cell medicines von Zhang, Liyang, Zuris, John A., Viswanathan, Ramya, Edelstein, Jasmine N., Turk, Rolf, Thommandru, Bernice, Rube, H. Tomas, Glenn, Steve E., Collingwood, Michael A., Bode, Nicole M., Beaudoin, Sarah F., Lele, Swarali, Scott, Sean N., Wasko, Kevin M., Sexton, Steven, Borges, Christopher M., Schubert, Mollie S., Kurgan, Gavin L., McNeill, Matthew S., Fernandez, Cecilia A., Myer, Vic E., Morgan, Richard A., Behlke, Mark A., Vakulskas, Christopher A.

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Boosting genome editing efficiency in human cells and plants with novel LbCas12a variants von Zhang, Liyang, Li, Gen, Zhang, Yingxiao, Cheng, Yanhao, Roberts, Nathaniel, Glenn, Steve E, DeZwaan-McCabe, Diane, Rube, H Tomas, Manthey, Jeff, Coleman, Gary, Vakulskas, Christopher A, Qi, Yiping

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A unified approach for quantifying and interpreting DNA shape readout by transcription factors von Rube, H Tomas, Rastogi, Chaitanya, Kribelbauer, Judith F, Bussemaker, Harmen J

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SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site von Zhang, Liyang, Martini, Gabriella D, Rube, H Tomas, Kribelbauer, Judith F, Rastogi, Chaitanya, FitzPatrick, Vincent D, Houtman, Jon C, Bussemaker, Harmen J, Pufall, Miles A

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Sequence features accurately predict genome-wide MeCP2 binding in vivo von Rube, H. Tomas, Lee, Wooje, Hejna, Miroslav, Chen, Huaiyang, Yasui, Dag H., Hess, John F., LaSalle, Janine M., Song, Jun S., Gong, Qizhi

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Author Correction: AsCas12a ultra nuclease facilitates the rapid generation of therapeutic cell medicines von Zhang, Liyang, Zuris, John A., Viswanathan, Ramya, Edelstein, Jasmine N., Turk, Rolf, Thommandru, Bernice, Rube, H. Tomas, Glenn, Steve E., Collingwood, Michael A., Bode, Nicole M., Beaudoin, Sarah F., Lele, Swarali, Scott, Sean N., Wasko, Kevin M., Sexton, Steven, Borges, Christopher M., Schubert, Mollie S., Kurgan, Gavin L., McNeill, Matthew S., Fernandez, Cecilia A., Myer, Vic E., Morgan, Richard A., Behlke, Mark A., Vakulskas, Christopher A.

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Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning von Rube, H. Tomas, Rastogi, Chaitanya, Feng, Siqian, Kribelbauer, Judith F., Li, Allyson, Becerra, Basheer, Melo, Lucas A. N., Do, Bach Viet, Li, Xiaoting, Adam, Hammaad H., Shah, Neel H., Mann, Richard S., Bussemaker, Harmen J.

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Accurate and sensitive quantification of protein-DNA binding affinity von Rastogi, Chaitanya, Rube, H. Tomas, Kribelbauer, Judith F., Crockerd, Justin, Loker, Ryan E., Martini, Gabriella D., Laptenko, Oleg, Freed-Pastor, William A., Prives, Carol, Stern, David L., Mann, Richard S., Bussemaker, Harmen J.

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Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes von Zhang, Liyang, Rube, H Tomas, Vakulskas, Christopher A, Behlke, Mark A, Bussemaker, Harmen J, Pufall, Miles A

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Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins von Kribelbauer, Judith F., Loker, Ryan E., Feng, Siqian, Rastogi, Chaitanya, Abe, Namiko, Rube, H. Tomas, Bussemaker, Harmen J., Mann, Richard S.

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Categorical spectral analysis of periodicity in nucleosomal DNA von Jin, Hu, Rube, H Tomas, Song, Jun S

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Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA von Kim, Minji, Kreig, Alex, Lee, Chun-Ying, Rube, H Tomas, Calvert, Jacob, Song, Jun S, Myong, Sua

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Quantifying the role of steric constraints in nucleosome positioning von Rube, H Tomas, Song, Jun S

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Counteracting age-related VEGF signaling insufficiency promotes healthy aging and extends life span von Grunewald, M., Kumar, S., Sharife, H., Volinsky, E., Gileles-Hillel, A., Licht, T., Permyakova, A., Hinden, L., Azar, S., Friedmann, Y., Kupetz, P., Tzuberi, R., Anisimov, A., Alitalo, K., Horwitz, M., Leebhoff, S., Khoma, O. Z., Hlushchuk, R., Djonov, V., Abramovitch, R., Tam, J., Keshet, E.

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Resolving specificity over a large footprint distinguishes androgen and glucocorticoid receptor DNA binding von Zhang, Liyang, Martini, Gabriella D., Rube, H. Tomas, Bussemaker, Harmen J., Pufall, Miles A.

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Additional file 1 of Boosting genome editing efficiency in human cells and plants with novel LbCas12a variants von Zhang, Liyang, Li, Gen, Zhang, Yingxiao, Cheng, Yanhao, Roberts, Nathaniel, Glenn, Steve E., DeZwaan-McCabe, Diane, Rube, H. Tomas, Manthey, Jeff, Coleman, Gary, Vakulskas, Christopher A., Qi, Yiping

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