Moving beyond the van Krevelen Diagram: A New Stoichiometric Approach for Compound Classification in Organisms von Rivas-Ubach, Albert, Liu, Yina, Bianchi, Thomas S, Tolić, Nikola, Jansson, Christer, Paša-Tolić, Ljiljana

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Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra von Tolić, Nikola, Liu, Yina, Liyu, Andrey, Shen, Yufeng, Tfaily, Malak M, Kujawinski, Elizabeth B, Longnecker, Krista, Kuo, Li-Jung, Robinson, Errol W, Paša-Tolić, Ljiljana, Hess, Nancy J

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Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes von Hawley, Alyse K., Brewer, Heather M., Norbeck, Angela D., Paša-Tolić, Ljiljana, Hallam, Steven J.

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High Speed Intact Protein Characterization Using 4X Frequency Multiplication, Ion Trap Harmonization, and 21 Tesla FTICR-MS von Shaw, Jared B, Gorshkov, Mikhail V, Wu, Qinghao, Paša-Tolić, Ljiljana

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Sequential extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry von Tfaily, Malak M., Chu, Rosalie K., Toyoda, Jason, Tolić, Nikola, Robinson, Errol W., Paša-Tolić, Ljiljana, Hess, Nancy J.

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Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry von Tfaily, Malak M, Chu, Rosalie K, Tolić, Nikola, Roscioli, Kristyn M, Anderton, Christopher R, Paša-Tolić, Ljiljana, Robinson, Errol W, Hess, Nancy J

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Increasing the Separation Capacity of Intact Histone Proteoforms Chromatography Coupling Online Weak Cation Exchange-HILIC to Reversed Phase LC UVPD-HRMS von Gargano, Andrea F. G, Shaw, Jared B, Zhou, Mowei, Wilkins, Christopher S, Fillmore, Thomas L, Moore, Ronald J, Somsen, Govert W, Paša-Tolić, Ljiljana

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Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry von Stopka, Sylwia A, Samarah, Laith Z, Shaw, Jared B, Liyu, Andrey V, Veličković, Dušan, Agtuca, Beverly J, Kukolj, Caroline, Koppenaal, David W, Stacey, Gary, Paša-Tolić, Ljiljana, Anderton, Christopher R, Vertes, Akos

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Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform von Zhou, Mowei, Uwugiaren, Naomi, Williams, Sarah M, Moore, Ronald J, Zhao, Rui, Goodlett, David, Dapic, Irena, Paša-Tolić, Ljiljana, Zhu, Ying

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Molecular Characterization of Organosulfur Compounds in Biodiesel and Diesel Fuel Secondary Organic Aerosol von Blair, Sandra L, MacMillan, Amanda C, Drozd, Greg T, Goldstein, Allen H, Chu, Rosalie K, Paša-Tolić, Ljiljana, Shaw, Jared B, Tolić, Nikola, Lin, Peng, Laskin, Julia, Laskin, Alexander, Nizkorodov, Sergey A

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Activation of the plant mevalonate pathway by extracellular ATP von Cho, Sung-Hwan, Tóth, Katalin, Kim, Daewon, Vo, Phuc H., Lin, Chung-Ho, Handakumbura, Pubudu P., Ubach, Albert Rivas, Evans, Sterling, Paša-Tolić, Ljiljana, Stacey, Gary

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Metabolomic profiling of wild‐type and mutant soybean root nodules using laser‐ablation electrospray ionization mass spectrometry reveals altered metabolism von Agtuca, Beverly J., Stopka, Sylwia A., Evans, Sterling, Samarah, Laith, Liu, Yang, Xu, Dong, Stacey, Minviluz G., Koppenaal, David W., Paša‐Tolić, Ljiljana, Anderton, Christopher R., Vertes, Akos, Stacey, Gary

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High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform von Dou, Maowei, Clair, Geremy, Tsai, Chia-Feng, Xu, Kerui, Chrisler, William B, Sontag, Ryan L, Zhao, Rui, Moore, Ronald J, Liu, Tao, Pasa-Tolic, Ljiljana, Smith, Richard D, Shi, Tujin, Adkins, Joshua N, Qian, Wei-Jun, Kelly, Ryan T, Ansong, Charles, Zhu, Ying

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High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip von Woo, Jongmin, Williams, Sarah M., Markillie, Lye Meng, Feng, Song, Tsai, Chia-Feng, Aguilera-Vazquez, Victor, Sontag, Ryan L., Moore, Ronald J., Hu, Dehong, Mehta, Hardeep S., Cantlon-Bruce, Joshua, Liu, Tao, Adkins, Joshua N., Smith, Richard D., Clair, Geremy C., Pasa-Tolic, Ljiljana, Zhu, Ying

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Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum von Shi, Tujin, Fillmore, Thomas L, Sun, Xuefei, Zhao, Rui, Schepmoes, Athena A, Hossain, Mahmud, Xie, Fang, Wu, Si, Kim, Jong-Seo, Jones, Nathan, Moore, Ronald J, Paša-Tolić, Ljiljana, Kagan, Jacob, Rodland, Karin D, Liu, Tao, Tang, Keqi, Camp, David G, Smith, Richard D, Qian, Wei-Jun

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Experimental Assessment of Mammalian Lipidome Complexity Using Multimodal 21 T FTICR Mass Spectrometry Imaging von Vandergrift, Gregory W., Zemaitis, Kevin J., Veličković, Dušan, Lukowski, Jessica K., Paša-Tolić, Ljiljana, Anderton, Christopher R., Kew, William

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The Human Proteoform Project: Defining the human proteome von Smith, Lloyd M, Agar, Jeffrey N, Chamot-Rooke, Julia, Danis, Paul O, Ge, Ying, Loo, Joseph A, Paša-Tolić, Ljiljana, Tsybin, Yury O, Kelleher, Neil L

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pyMS-Vis, an Open-Source Python Application for Visualizing and Investigating Deconvoluted Top-Down Mass Spectrometric Experiments: A Histone Proteoform Case Study von Pesavento, James J., Bindra, Megan S., Das, Udayan, Rommelfanger, Sarah R., Zhou, Mowei, Paša-Tolić, Ljiljana, Umen, James G.

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Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations von Samarah, Laith Z, Khattar, Rikkita, Tran, Tina H, Stopka, Sylwia A, Brantner, Christine A, Parlanti, Paola, Veličković, Dušan, Shaw, Jared B, Agtuca, Beverly J, Stacey, Gary, Paša-Tolić, Ljiljana, Tolić, Nikola, Anderton, Christopher R, Vertes, Akos

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Improved Characterization of Soil Organic Matter by Integrating FT-ICR MS, Liquid Chromatography Tandem Mass Spectrometry, and Molecular Networking: A Case Study of Root Litter Dec... von DiDonato, Nicole, Rivas-Ubach, Albert, Kew, William, Sokol, Noah W., Clendinen, Chaevien S., Kyle, Jennifer E., Martínez, Carmen Enid, Foley, Megan M., Tolić, Nikola, Pett-Ridge, Jennifer, Paša-Tolić, Ljiljana

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