Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies von Gohl, Daryl M, Vangay, Pajau, Garbe, John, MacLean, Allison, Hauge, Adam, Becker, Aaron, Gould, Trevor J, Clayton, Jonathan B, Johnson, Timothy J, Hunter, Ryan, Knights, Dan, Beckman, Kenneth B

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Pathogenomics of the Virulence Plasmids of Escherichia coli von Johnson, Timothy J, Nolan, Lisa K

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Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment von Danzeisen, Jessica L, Kim, Hyeun Bum, Isaacson, Richard E, Tu, Zheng Jin, Johnson, Timothy J

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Salmonella Pathogenicity and Host Adaptation in Chicken-Associated Serovars von Foley, Steven L, Johnson, Timothy J, Ricke, Steven C, Nayak, Rajesh, Danzeisen, Jessica

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Captivity humanizes the primate microbiome von Clayton, Jonathan B., Vangay, Pajau, Huang, Hu, Ward, Tonya, Hillmann, Benjamin M., Al-Ghalith, Gabriel A., Travis, Dominic A., Long, Ha Thang, Van Tuan, Bui, Van Minh, Vo, Cabana, Francis, Nadler, Tilo, Toddes, Barbara, Murphy, Tami, Glander, Kenneth E., Johnson, Timothy J., Knights, Dan

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Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131 von Stoesser, Nicole, Sheppard, Anna E, Pankhurst, Louise, De Maio, Nicola, Moore, Catrin E, Sebra, Robert, Turner, Paul, Anson, Luke W, Kasarskis, Andrew, Batty, Elizabeth M, Kos, Veronica, Wilson, Daniel J, Phetsouvanh, Rattanaphone, Wyllie, David, Sokurenko, Evgeni, Manges, Amee R, Johnson, Timothy J, Price, Lance B, Peto, Timothy E A, Johnson, James R, Didelot, Xavier, Walker, A Sarah, Crook, Derrick W

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Assessing the Risk of Antimicrobial Resistant Enterococcal Infections in Humans Due to Bacitracin Usage in Poultry von Singer, Randall S., Johnson, Timothy J.

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Comparative genomics of multidrug resistance-encoding IncA/C plasmids from commensal and pathogenic Escherichia coli from multiple animal sources von Fernández-Alarcón, Claudia, Singer, Randall S, Johnson, Timothy J

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Escherichia coli ST131-H22 as a Foodborne Uropathogen von Liu, Cindy M, Stegger, Marc, Aziz, Maliha, Johnson, Timothy J, Waits, Kara, Nordstrom, Lora, Gauld, Lori, Weaver, Brett, Rolland, Diana, Statham, Sally, Horwinski, Joseph, Sariya, Sanjeev, Davis, Gregg S, Sokurenko, Evgeni, Keim, Paul, Johnson, James R, Price, Lance B

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Piglet gut microbial shifts early in life: causes and effects von Guevarra, Robin B, Lee, Jun Hyung, Lee, Sun Hee, Seok, Min-Jae, Kim, Doo Wan, Kang, Bit Na, Johnson, Timothy J, Isaacson, Richard E, Kim, Hyeun Bum

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Genomic landscape of multi-drug resistant avian pathogenic Escherichia coli recovered from broilers von Azam, Mariya, Mohsin, Mashkoor, Johnson, Timothy J., Smith, Emily A., Johnson, Abigail, Umair, Muhammad, Saleemi, Muhammad Kashif, Sajjad-ur-Rahman

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Population Dynamics of Salmonella enterica Serotypes in Commercial Egg and Poultry Production von FOLEY, Steven L, NAYAK, Rajesh, HANNING, Irene B, JOHNSON, Timothy J, JING HAN, RICKE, Steven C

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Segmented Filamentous Bacteria - Metabolism Meets Immunity von Hedblom, Grant A, Reiland, Holly A, Sylte, Matthew J, Johnson, Timothy J, Baumler, David J

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Identification of Minimal Predictors of Avian Pathogenic Escherichia coli Virulence for Use as a Rapid Diagnostic Tool von Johnson, Timothy J, Wannemuehler, Yvonne, Doetkott, Curt, Johnson, Sara J, Rosenberger, Sandra C, Nolan, Lisa K

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Molecular epidemiology of Mycoplasma hyorhinis porcine field isolates in the United States von Clavijo, Maria J, Sreevatsan, Srinand, Johnson, Timothy J, Rovira, Albert

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Accurate Measurement of the Optical Constants n and k for a Series of 57 Inorganic and Organic Liquids for Optical Modeling and Detection von Myers, Tanya L., Tonkyn, Russell G., Danby, Tyler O., Taubman, Matthew S., Bernacki, Bruce E., Birnbaum, Jerome C., Sharpe, Steven W., Johnson, Timothy J.

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Multiple Discharges of Treated Municipal Wastewater Have a Small Effect on the Quantities of Numerous Antibiotic Resistance Determinants in the Upper Mississippi River von LaPara, Timothy M, Madson, Matthew, Borchardt, Spencer, Lang, Kevin S, Johnson, Timothy J

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Farm Stage, Bird Age, and Body Site Dominantly Affect the Quantity, Taxonomic Composition, and Dynamics of Respiratory and Gut Microbiota of Commercial Layer Chickens von Ngunjiri, John M, Taylor, Kara J M, Abundo, Michael C, Jang, Hyesun, Elaish, Mohamed, Kc, Mahesh, Ghorbani, Amir, Wijeratne, Saranga, Weber, Bonnie P, Johnson, Timothy J, Lee, Chang-Won

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Prevalence, antibiotic resistance, virulence and genetic diversity of Staphylococcus aureus isolated from bulk tank milk samples of US dairy herds von Patel, Kruthika, Godden, Sandra M., Royster, Erin E., Crooker, Brian A., Johnson, Timothy J., Smith, Emily A., Sreevatsan, Srinand

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Disentangling the confounding spectroscopy of C1 molecules: Without symmetry as a guide, everything is allowed von Wilhelm, Michael J., Johnson, Timothy J., Myers, Tanya L.

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