Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells von Gupta, Ishaan, Collier, Paul G, Haase, Bettina, Mahfouz, Ahmed, Joglekar, Anoushka, Floyd, Taylor, Koopmans, Frank, Barres, Ben, Smit, August B, Sloan, Steven A, Luo, Wenjie, Fedrigo, Olivier, Ross, M Elizabeth, Tilgner, Hagen U

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The tech for the next decade: promises and challenges in genome biology von Hajirasouliha, Iman, Tilgner, Hagen U

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Getting the Entire Message: Progress in Isoform Sequencing von Hardwick, Simon A, Joglekar, Anoushka, Flicek, Paul, Frankish, Adam, Tilgner, Hagen U

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Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 von Biegler, Matthew T., Fedrigo, Olivier, Collier, Paul, Mountcastle, Jacquelyn, Haase, Bettina, Tilgner, Hagen U., Jarvis, Erich D.

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Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions von Hardwick, Simon A, Bassett, Samuel D, Kaczorowski, Dominik, Blackburn, James, Barton, Kirston, Bartonicek, Nenad, Carswell, Shaun L, Tilgner, Hagen U, Loy, Clement, Halliday, Glenda, Mercer, Tim R, Smith, Martin A, Mattick, John S

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Accurate isoform discovery with IsoQuant using long reads von Prjibelski, Andrey D., Mikheenko, Alla, Joglekar, Anoushka, Smetanin, Alexander, Jarroux, Julien, Lapidus, Alla L., Tilgner, Hagen U.

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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing von Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., Xu, Joshua

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Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns von Mikheenko, Alla, Prjibelski, Andrey D, Joglekar, Anoushka, Tilgner, Hagen U

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ScisorWiz: visualizing differential isoform expression in single-cell long-read data von Stein, Alexander N, Joglekar, Anoushka, Poon, Chi-Lam, Tilgner, Hagen U

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The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing von Foord, Careen, Hsu, Justine, Jarroux, Julien, Hu, Wen, Belchikov, Natan, Pollard, Shaun, He, Yi, Joglekar, Anoushka, Tilgner, Hagen U.

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From words to complete phrases: insight into single-cell isoforms using short and long reads von Joglekar, Anoushka, Foord, Careen, Jarroux, Julien, Pollard, Shaun, Tilgner, Hagen U

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Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue von Hardwick, Simon A., Hu, Wen, Joglekar, Anoushka, Fan, Li, Collier, Paul G., Foord, Careen, Balacco, Jennifer, Lanjewar, Samantha, Sampson, Maureen McGuirk, Koopmans, Frank, Prjibelski, Andrey D., Mikheenko, Alla, Belchikov, Natan, Jarroux, Julien, Lucas, Anne Bergstrom, Palkovits, Miklós, Luo, Wenjie, Milner, Teresa A., Ndhlovu, Lishomwa C., Smit, August B., Trojanowski, John Q., Lee, Virginia M. Y., Fedrigo, Olivier, Sloan, Steven A., Tombácz, Dóra, Ross, M. Elizabeth, Jarvis, Erich, Boldogkői, Zsolt, Gan, Li, Tilgner, Hagen U.

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Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain von Joglekar, Anoushka, Hu, Wen, Zhang, Bei, Narykov, Oleksandr, Diekhans, Mark, Marrocco, Jordan, Balacco, Jennifer, Ndhlovu, Lishomwa C., Milner, Teresa A., Fedrigo, Olivier, Jarvis, Erich D., Sheynkman, Gloria, Korkin, Dmitry, Ross, M. Elizabeth, Tilgner, Hagen U.

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Pronounced early differentiation underlies zebra finch gonadal germ cell development von Biegler, Matthew T., Belay, Kirubel, Wang, Wei, Szialta, Christina, Collier, Paul, Luo, Ji-Dung, Haase, Bettina, Gedman, Gregory L., Sidhu, Asha V., Harter, Elijah, Rivera-López, Carlos, Amoako-Boadu, Kwame, Fedrigo, Olivier, Tilgner, Hagen U., Carroll, Thomas, Jarvis, Erich D., Keyte, Anna L.

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Widespread changes in alternative splicing in developing and adult mouse brain

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A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain von Joglekar, Anoushka, Prjibelski, Andrey, Mahfouz, Ahmed, Collier, Paul, Lin, Susan, Schlusche, Anna Katharina, Marrocco, Jordan, Williams, Stephen R., Haase, Bettina, Hayes, Ashley, Chew, Jennifer G., Weisenfeld, Neil I., Wong, Man Ying, Stein, Alexander N., Hardwick, Simon A., Hunt, Toby, Wang, Qi, Dieterich, Christoph, Bent, Zachary, Fedrigo, Olivier, Sloan, Steven A., Risso, Davide, Jarvis, Erich D., Flicek, Paul, Luo, Wenjie, Pitt, Geoffrey S., Frankish, Adam, Smit, August B., Ross, M. Elizabeth, Tilgner, Hagen U.

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SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse von Koopmans, Frank, van Nierop, Pim, Andres-Alonso, Maria, Byrnes, Andrea, Cijsouw, Tony, Coba, Marcelo P, Cornelisse, L Niels, Farrell, Ryan J, Goldschmidt, Hana L, Howrigan, Daniel P, Hussain, Natasha K, Imig, Cordelia, de Jong, Arthur P H, Jung, Hwajin, Kohansalnodehi, Mahdokht, Kramarz, Barbara, Lipstein, Noa, Lovering, Ruth C, MacGillavry, Harold, Mariano, Vittoria, Mi, Huaiyu, Ninov, Momchil, Osumi-Sutherland, David, Pielot, Rainer, Smalla, Karl-Heinz, Tang, Haiming, Tashman, Katherine, Toonen, Ruud F G, Verpelli, Chiara, Reig-Viader, Rita, Watanabe, Kyoko, van Weering, Jan, Achsel, Tilmann, Ashrafi, Ghazaleh, Asi, Nimra, Brown, Tyler C, De Camilli, Pietro, Feuermann, Marc, Foulger, Rebecca E, Gaudet, Pascale, Joglekar, Anoushka, Kanellopoulos, Alexandros, Malenka, Robert, Nicoll, Roger A, Pulido, Camila, de Juan-Sanz, Jaime, Sheng, Morgan, Südhof, Thomas C, Tilgner, Hagen U, Bagni, Claudia, Bayés, Àlex, Biederer, Thomas, Brose, Nils, Chua, John Jia En, Dieterich, Daniela C, Gundelfinger, Eckart D, Hoogenraad, Casper, Huganir, Richard L, Jahn, Reinhard, Kaeser, Pascal S, Kim, Eunjoon, Kreutz, Michael R, McPherson, Peter S, Neale, Ben M, O'Connor, Vincent, Posthuma, Danielle, Ryan, Timothy A, Sala, Carlo, Feng, Guoping, Hyman, Steven E, Thomas, Paul D, Smit, August B, Verhage, Matthijs

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SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse von Koopmans, Frank, van Nierop, Pim, Andres-Alonso, Maria, Bymes, Andrea, Cijsouw, Tony, Coba, Marcelo P, Cornelisse, L. Niels, Farrell, Ryan J, Goldschmidt, Hana L, Howrigan, Daniel P, Hussain, Natasha K, Imig, Cordelia, de Jong, Arthur P.H, Jung, Hwajin, Kohansalnodehi, Mandokht, Kramarz, Barbara, Lipstein, Noa, Lovering, Ruth C, MacGillavry, Harold, Mariano, Vittoria, Mi, Huaiyu, Ninov, Momchil, Osumi-Sutherland, David, Pielot, Rainer, Smalla, Karl-Heinz, Tang, Haiming, Tashman, Katherine, Toonen, Ruud F.G, Verpelli, Chiara, Reig-Viader, Rita, Watanabe, Kyoko, van Weering, Jan, Achsel, Tilmann, Ashrafi, Ghazaleh, Asi, Nimra, Brown, Tyler C, De Camilli, Pietro, Feuermann, Marc, Foulger, Rebecca E, Gaudet, Pascale, Joglekar, Anoushka, Kanellopoulos, Alexandros, Malenka, Robert, Nicoll, Roger A, Pulido, Camila, de Juan-Sanz, Jaime, Sheng, Morgan, Sudhof, Thomas C, Tilgner, Hagen U, Bagni, Claudia, Bayes, Alex, Biederer, Thomas, Brose, Nils, Chua, John Jia En, Dieterich, Daniela C, Gundelfinger, Eckart D, Hoogenraad, Casper, Huganir, Richard L, Jahn, Reinhard, Kaeser, Pascal S, Kim, Eunjoon, Kreutz, Michael R, McPherson, Peter S, Neale, Ben M, O'Connor, Vincent, Posthuma, Danielle, Ryan, Timothy A, Sala, Carlo, Feng, Guoping, Hyman, Steven E, Thomas, Paul D, Smit, August B, Verhage, Matthijs

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Mouse SIRV and simulated data used in the IsoQuant publication von Andrey, Prjibelski, Alla, Mikheenko, Joglekar, Anoushka, Jarroux, Julien, Tilgner, Hagen U.

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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification von Pardo-Palacios, Francisco J, Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E, De María, Maite, Adams, Matthew S, Balderrama-Gutierrez, Gabriela, Behera, Amit K, Gonzalez, Jose M, Hunt, Toby, Lagarde, Julien, Liang, Cindy E, Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A, Prjibelski, Andrey D, Birol, Inanc, Bostan, Hamed, Brooks, Ashley M, Hasan Çelik, Muhammed, Chen, Ying, Du, Mei RM, Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E, Sim, Andre D, Tang, Alison D, Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y, Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M, Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M, Panayotova, Nedka G, Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley, Carninci, Piero, Denslow, Nancy D, Guigó, Roderic, Hunter, Margaret E, Tilgner, Hagen U, Wold, Barbara J, Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M, Mortazavi, Ali, Conesa, Ana, Brooks, Angela N

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