The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms von Hollas, Michael A R, Robey, Matthew T, Fellers, Ryan T, LeDuc, Richard D, Thomas, Paul M, Kelleher, Neil L

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Complete Protein Characterization Using Top-Down Mass Spectrometry and Ultraviolet Photodissociation von Shaw, Jared B, Li, Wenzong, Holden, Dustin D, Zhang, Yan, Griep-Raming, Jens, Fellers, Ryan T, Early, Bryan P, Thomas, Paul M, Kelleher, Neil L, Brodbelt, Jennifer S

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Identification and Quantification of Proteoforms by Mass Spectrometry von Schaffer, Leah V., Millikin, Robert J., Miller, Rachel M., Anderson, Lissa C., Fellers, Ryan T., Ge, Ying, Kelleher, Neil L., LeDuc, Richard D., Liu, Xiaowen, Payne, Samuel H., Sun, Liangliang, Thomas, Paul M., Tucholski, Trisha, Wang, Zhe, Wu, Si, Wu, Zhijie, Yu, Dahang, Shortreed, Michael R., Smith, Lloyd M.

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Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids von Martin, Rey W., Des Soye, Benjamin J., Kwon, Yong-Chan, Kay, Jennifer, Davis, Roderick G., Thomas, Paul M., Majewska, Natalia I., Chen, Cindy X., Marcum, Ryan D., Weiss, Mary Grace, Stoddart, Ashleigh E., Amiram, Miriam, Ranji Charna, Arnaz K., Patel, Jaymin R., Isaacs, Farren J., Kelleher, Neil L., Hong, Seok Hoon, Jewett, Michael C.

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On the Scalability and Requirements of Whole Protein Mass Spectrometry von Compton, Philip D, Zamdborg, Leonid, Thomas, Paul M, Kelleher, Neil L

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A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli von Des Soye, Benjamin J., Gerbasi, Vincent R., Thomas, Paul M., Kelleher, Neil L., Jewett, Michael C.

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Loss of BAP1 function leads to EZH2-dependent transformation von LaFave, Lindsay M, Béguelin, Wendy, Koche, Richard, Teater, Matt, Spitzer, Barbara, Chramiec, Alan, Papalexi, Efthymia, Keller, Matthew D, Hricik, Todd, Konstantinoff, Katerina, Micol, Jean-Baptiste, Durham, Benjamin, Knutson, Sarah K, Campbell, John E, Blum, Gil, Shi, Xinxu, Doud, Emma H, Krivtsov, Andrei V, Chung, Young Rock, Khodos, Inna, de Stanchina, Elisa, Ouerfelli, Ouathek, Adusumilli, Prasad S, Thomas, Paul M, Kelleher, Neil L, Luo, Minkui, Keilhack, Heike, Abdel-Wahab, Omar, Melnick, Ari, Armstrong, Scott A, Levine, Ross L

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NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle von Kosciuk, Tatsiana, Price, Ian R., Zhang, Xiaoyu, Zhu, Chengliang, Johnson, Kayla N., Zhang, Shuai, Halaby, Steve L., Komaniecki, Garrison P., Yang, Min, DeHart, Caroline J., Thomas, Paul M., Kelleher, Neil L., Fromme, J. Christopher, Lin, Hening

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Value Conditioning Modulates Visual Working Memory Processes von Thomas, Paul M. J, FitzGibbon, Lily, Raymond, Jane E

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Mapping intact protein isoforms in discovery mode using top-down proteomics von Tran, John C., Zamdborg, Leonid, Ahlf, Dorothy R., Lee, Ji Eun, Catherman, Adam D., Durbin, Kenneth R., Tipton, Jeremiah D., Vellaichamy, Adaikkalam, Kellie, John F., Li, Mingxi, Wu, Cong, Sweet, Steve M. M., Early, Bryan P., Siuti, Nertila, LeDuc, Richard D., Compton, Philip D., Thomas, Paul M., Kelleher, Neil L.

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Measurement of acetylation turnover at distinct lysines in human histones identifies long-lived acetylation sites von Zheng, Yupeng, Thomas, Paul M., Kelleher, Neil L.

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Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase von Ro, Soo Y., Schachner, Luis F., Koo, Christopher W., Purohit, Rahul, Remis, Jonathan P., Kenney, Grace E., Liauw, Brandon W., Thomas, Paul M., Patrie, Steven M., Kelleher, Neil L., Rosenzweig, Amy C.

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Microbial and metabolic succession on common building materials under high humidity conditions von Lax, Simon, Cardona, Cesar, Zhao, Dan, Winton, Valerie J., Goodney, Gabriel, Gao, Peng, Gottel, Neil, Hartmann, Erica M., Henry, Chris, Thomas, Paul M., Kelley, Scott T., Stephens, Brent, Gilbert, Jack A.

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Large-scale Top-down Proteomics of the Human Proteome: Membrane Proteins, Mitochondria, and Senescence von Catherman, Adam D., Durbin, Kenneth R., Ahlf, Dorothy R., Early, Bryan P., Fellers, Ryan T., Tran, John C., Thomas, Paul M., Kelleher, Neil L.

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The biosynthesis of methanobactin von Kenney, Grace E, Dassama, Laura M K, Pandelia, Maria-Eirini, Gizzi, Anthony S, Martinie, Ryan J, Gao, Peng, DeHart, Caroline J, Schachner, Luis F, Skinner, Owen S, Ro, Soo Y, Zhu, Xiao, Sadek, Monica, Thomas, Paul M, Almo, Steven C, Bollinger, Jr, J Martin, Krebs, Carsten, Kelleher, Neil L, Rosenzweig, Amy C

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Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry von Anderson, Lissa C, DeHart, Caroline J, Kaiser, Nathan K, Fellers, Ryan T, Smith, Donald F, Greer, Joseph B, LeDuc, Richard D, Blakney, Greg T, Thomas, Paul M, Kelleher, Neil L, Hendrickson, Christopher L

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Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria von Fisher, Oriana S., Kenney, Grace E., Ross, Matthew O., Ro, Soo Y., Lemma, Betelehem E., Batelu, Sharon, Thomas, Paul M., Sosnowski, Victoria C., DeHart, Caroline J., Kelleher, Neil L., Stemmler, Timothy L., Hoffman, Brian M., Rosenzweig, Amy C.

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A mixed-valent Fe(II)Fe(III) species converts cysteine to an oxazolone/thioamide pair in methanobactin biosynthesis von Park, Yun Ji, Jodts, Richard J, Slater, Jeffrey W, Reyes, Reyvin M, Winton, Valerie J, Montaser, Rana A, Thomas, Paul M, Dowdle, William B, Ruiz, Anahi, Kelleher, Neil L, Bollinger, Jr, J Martin, Krebs, Carsten, Hoffman, Brian M, Rosenzweig, Amy C

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Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms von LeDuc, Richard D, Deutsch, Eric W, Binz, Pierre-Alain, Fellers, Ryan T, Cesnik, Anthony J, Klein, Joshua A, Van Den Bossche, Tim, Gabriels, Ralf, Yalavarthi, Arshika, Perez-Riverol, Yasset, Carver, Jeremy, Bittremieux, Wout, Kawano, Shin, Pullman, Benjamin, Bandeira, Nuno, Kelleher, Neil L, Thomas, Paul M, Vizcaíno, Juan Antonio

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Total kinetic analysis reveals how combinatorial methylation patterns are established on lysines 27 and 36 of histone H3 von Zheng, Yupeng, Sweet, Steve M. M, Popovic, Relja, Martinez-Garcia, Eva, Tipton, Jeremiah D, Thomas, Paul M, Licht, Jonathan D, Kelleher, Neil L

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