PANTHER-PSEP: predicting disease-causing genetic variants using position-specific evolutionary preservation von Tang, Haiming, Thomas, Paul D

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PANTHER: Making genome‐scale phylogenetics accessible to all von Thomas, Paul D., Ebert, Dustin, Muruganujan, Anushya, Mushayahama, Tremayne, Albou, Laurent‐Philippe, Mi, Huaiyu

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PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API von Mi, Huaiyu, Ebert, Dustin, Muruganujan, Anushya, Mills, Caitlin, Albou, Laurent-Philippe, Mushayamaha, Tremayne, Thomas, Paul D

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PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees von Mi, Huaiyu, Muruganujan, Anushya, Thomas, Paul D

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PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements von Mi, Huaiyu, Huang, Xiaosong, Muruganujan, Anushya, Tang, Haiming, Mills, Caitlin, Kang, Diane, Thomas, Paul D

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PANTHER version 10: expanded protein families and functions, and analysis tools von Mi, Huaiyu, Poudel, Sagar, Muruganujan, Anushya, Casagrande, John T, Thomas, Paul D

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Tools for Predicting the Functional Impact of Nonsynonymous Genetic Variation von Tang, Haiming, Thomas, Paul D

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InterPro in 2022 von Paysan-Lafosse, Typhaine, Blum, Matthias, Chuguransky, Sara, Grego, Tiago, Pinto, Beatriz Lázaro, Salazar, Gustavo A, Bileschi, Maxwell L, Bork, Peer, Bridge, Alan, Colwell, Lucy, Gough, Julian, Haft, Daniel H, Letunić, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex

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The InterPro protein families and domains database: 20 years on von Blum, Matthias, Chang, Hsin-Yu, Chuguransky, Sara, Grego, Tiago, Kandasaamy, Swaathi, Mitchell, Alex, Nuka, Gift, Paysan-Lafosse, Typhaine, Qureshi, Matloob, Raj, Shriya, Richardson, Lorna, Salazar, Gustavo A, Williams, Lowri, Bork, Peer, Bridge, Alan, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex, Finn, Robert D

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GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness von Liu, Meng, Thomas, Paul D

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The InterPro protein families database: the classification resource after 15 years von Mitchell, Alex, Chang, Hsin-Yu, Daugherty, Louise, Fraser, Matthew, Hunter, Sarah, Lopez, Rodrigo, McAnulla, Craig, McMenamin, Conor, Nuka, Gift, Pesseat, Sebastien, Sangrador-Vegas, Amaia, Scheremetjew, Maxim, Rato, Claudia, Yong, Siew-Yit, Bateman, Alex, Punta, Marco, Attwood, Teresa K, Sigrist, Christian J A, Redaschi, Nicole, Rivoire, Catherine, Xenarios, Ioannis, Kahn, Daniel, Guyot, Dominique, Bork, Peer, Letunic, Ivica, Gough, Julian, Oates, Matt, Haft, Daniel, Huang, Hongzhan, Natale, Darren A, Wu, Cathy H, Orengo, Christine, Sillitoe, Ian, Mi, Huaiyu, Thomas, Paul D, Finn, Robert D

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PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools von Mi, Huaiyu, Muruganujan, Anushya, Ebert, Dustin, Huang, Xiaosong, Thomas, Paul D

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AI and the democratization of knowledge von Dessimoz, Christophe, Thomas, Paul D.

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Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation von Liu, Zhu, Mushayahama, Tremayne, Queme, Bryan, Ebert, Dustin, Muruganujan, Anushya, Mills, Caitlin, Thomas, Paul D, Mi, Huaiyu

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Impaired SIRT1 nucleocytoplasmic shuttling in the senescent heart during ischemic stress von Tong, Chao, Morrison, Alex, Mattison, Samantha, Qian, Su, Bryniarski, Mark, Rankin, Bethany, Wang, Jun, Thomas, D. Paul, Li, Ji

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Kat3 coactivators in somatic stem cells and cancer stem cells: biological roles, evolution, and pharmacologic manipulation von Thomas, Paul D., Kahn, Michael

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Big data and other challenges in the quest for orthologs von Sonnhammer, Erik L L, Gabaldón, Toni, Sousa da Silva, Alan W, Martin, Maria, Robinson-Rechavi, Marc, Boeckmann, Brigitte, Thomas, Paul D, Dessimoz, Christophe

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Caspase recruitment domain-containing protein 9 (CARD9) knockout reduces regional ischemia/reperfusion injury through an attenuated inflammatory response von Qin, Xing, Peterson, Matthew R, Haller, Samantha E, Cao, Li, Thomas, D Paul, He, Guanglong

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Coding Single-Nucleotide Polymorphisms Associated with Complex vs. Mendelian Disease: Evolutionary Evidence for Differences in Molecular Effects von Thomas, Paul D., Kejariwal, Anish, Levitt, Michael

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Advances and Applications in the Quest for Orthologs von Glover, Natasha, Dessimoz, Christophe, Ebersberger, Ingo, Forslund, Sofia K, Gabaldón, Toni, Huerta-Cepas, Jaime, Martin, Maria-Jesus, Muffato, Matthieu, Patricio, Mateus, Pereira, Cécile, da Silva, Alan Sousa, Wang, Yan, Sonnhammer, Erik, Thomas, Paul D

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