The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding von Cesari, Stella, Thilliez, Gaëtan, Ribot, Cécile, Chalvon, Véronique, Michel, Corinne, Jauneau, Alain, Rivas, Susana, Alaux, Ludovic, Kanzaki, Hiroyuki, Okuyama, Yudai, Morel, Jean-Benoit, Fournier, Elisabeth, Tharreau, Didier, Terauchi, Ryohei, Kroj, Thomas

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Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes von Thilliez, Gaetan J. A., Armstrong, Miles R., Lim, Tze-Yin, Baker, Katie, Jouet, Agathe, Ward, Ben, van Oosterhout, Cock, Jones, Jonathan D. G., Huitema, Edgar, Birch, Paul R. J., Hein, Ingo

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Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation von Bawn, Matt, Alikhan, Nabil-Fareed, Thilliez, Gaetan, Kirkwood, Mark, Wheeler, Nicole E., Petrovska, Liljana, Dallman, Timothy J., Adriaenssens, Evelien M., Hall, Neil, Kingsley, Robert A.

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Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field von Jouet, Agathe, Saunders, Diane G. O., McMullan, Mark, Ward, Ben, Furzer, Oliver, Jupe, Florian, Cevik, Volkan, Hein, Ingo, Thilliez, Gaetan J. A., Holub, Eric, van Oosterhout, Cock, Jones, Jonathan D. G.

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SGI-4 in Monophasic Salmonella Typhimurium ST34 Is a Novel ICE That Enhances Resistance to Copper von Branchu, Priscilla, Charity, Oliver J, Bawn, Matt, Thilliez, Gaetan, Dallman, Timothy J, Petrovska, Liljana, Kingsley, Robert A

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Collateral sensitivity increases the efficacy of a rationally designed bacteriophage combination to control Salmonella enterica von Acton, Luke, Pye, Hannah V, Thilliez, Gaëtan, Kolenda, Rafał, Matthews, Michaela, Turner, A Keith, Yasir, Muhammad, Holden, Emma, Al-Khanaq, Haider, Webber, Mark, Adriaenssens, Evelien M, Kingsley, Robert A

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Faecal carriage of ESBL producing and colistin resistant Escherichia coli in avian species over a 2-year period (2017-2019) in Zimbabwe von Takawira, Faustinos Tatenda, Pitout, Johann D D, Thilliez, Gaetan, Mashe, Tapfumanei, Gutierrez, Ana Victoria, Kingsley, Robert A, Peirano, Gisele, Matheu, Jorge, Midzi, Stanley Munyaradzi, Mwamakamba, Lusubilo Witson, Gally, David L, Tarupiwa, Andrew, Mukavhi, Leckson, Ehlers, Marthie M, Mtapuri-Zinyowera, Sekesai, Kock, Marleen M

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Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data von Mashe, Tapfumanei, Takawira, Faustinos Tatenda, de Oliveira Martins, Leonardo, Gudza-Mugabe, Muchaneta, Chirenda, Joconiah, Munyanyi, Manes, Chaibva, Blessmore V, Tarupiwa, Andrew, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Ruhanya, Vurayai, Phiri, Isaac, Manangazira, Portia, Goredema, Alexander, Danda, Sydney, Chabata, Israel, Jonga, Janet, Munharira, Rutendo, Masunda, Kudzai, Mukeredzi, Innocent, Mangwanya, Douglas, Trotter, Alex, Le Viet, Thanh, Rudder, Steven, Kay, Gemma, Baker, David, Thilliez, Gaetan, Gutierrez, Ana Victoria, O'Grady, Justin, Hove, Maxwell, Mutapuri-Zinyowera, Sekesai, Page, Andrew J, Kingsley, Robert A, Mhlanga, Gibson

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A Perspective on CRN Proteins in the Genomics Age: Evolution, Classification, Delivery and Function Revisited von Amaro, Tiago M M M, Thilliez, Gaëtan J A, Motion, Graham B, Huitema, Edgar

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A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses von Elek, Claire K A, Brown, Teagan L, Le Viet, Thanh, Evans, Rhiannon, Baker, David J, Telatin, Andrea, Tiwari, Sumeet K, Al-Khanaq, Haider, Thilliez, Gaëtan, Kingsley, Robert A, Hall, Lindsay J, Webber, Mark A, Adriaenssens, Evelien M

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Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia von Foster-Nyarko, Ebenezer, Alikhan, Nabil-Fareed, Ravi, Anuradha, Thilliez, Gaetan, Thomson, Nicholas M., Baker, David, Kay, Gemma, Cramer, Jennifer D., O'Grady, Justin, Antonio, Martin, Pallen, Mark J.

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Mutation of hilD in a Salmonella Derby lineage linked to swine adaptation and reduced risk to human health von Tambassi, Martina, Berni, Melissa, Bracchi, Chiara, Scaltriti, Erika, Morganti, Marina, Bolzoni, Luca, Tanner, Jennifer R., Thilliez, Gaëtan, Kingsley, Robert A., Pongolini, Stefano, Casadei, Gabriele

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Utilizing "Omic" Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections von Van Weymers, Pauline S M, Baker, Katie, Chen, Xinwei, Harrower, Brian, Cooke, David E L, Gilroy, Eleanor M, Birch, Paul R J, Thilliez, Gaëtan J A, Lees, Alison K, Lynott, James S, Armstrong, Miles R, McKenzie, Gaynor, Bryan, Glenn J, Hein, Ingo

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Random mutagenesis screen shows that Phytophthora capsici CRN83_152‐mediated cell death is not required for its virulence function(s) von Amaro, Tiago M. M. M., Thilliez, Gaëtan J. A., Mcleod, Rory A., Huitema, Edgar

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Salmonella intracellular adaptation is key to understand cephalosporin treatment relapse von Thilliez, Gaëtan, Kingsley, Robert A.

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Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential von Kirkwood, Mark, Vohra, Prerna, Bawn, Matt, Thilliez, Gaëtan, Pye, Hannah, Tanner, Jennifer, Chintoan-Uta, Cosmin, Branchu, Priscilla, Petrovska, Liljana, Dallman, Timothy, Hall, Neil, Stevens, Mark P., Kingsley, Robert A.

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Molecular epidemiology of extended-spectrum beta-lactamase-producing extra-intestinal pathogenic Escherichia coli strains over a 2-year period (2017-2019) from Zimbabwe von Takawira, Faustinos Tatenda, Pitout, Johann Dd, Thilliez, Gaetan, Mashe, Tapfumanei, Gutierrez, Ana Victoria, Kingsley, Robert A., Peirano, Gisele, Matheu, Jorge, Midzi, Stanley M., Mwamakamba, Lusubilo W., Gally, David L., Tarupiwa, Andrew, Mukavhi, Leckson, Ehlers, Marthie M., Mtapuri-Zinyowera, Sekesai, Kock, Marleen M.

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A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa von Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E., Lessells, Richard, Cuadros, Diego, Martin, Darren P., Rasmussen, David A., Zekri, Abdel-Rahman N., Sangare, Abdoul K., Ouedraogo, Abdoul-Salam, Sesay, Abdul K., Priscilla, Abechi, Kemi, Adedotun-Sulaiman, Olubusuyi, Adewunmi M., Oluwapelumi, Adeyemi O. O., Hammami, Adnene, Amuri, Adrienne A., Sayed, Ahmad, Ouma, Ahmed E. O., Elargoubi, Aida, Ajayi, Nnennaya A., Victoria, Ajogbasile F., Kazeem, Akano, George, Akpede, Trotter, Alexander J., Yahaya, Ali A., Keita, Alpha K., Diallo, Amadou, Kone, Amadou, Souissi, Amal, Chtourou, Amel, Gutierrez, Ana, Page, Andrew J., Vinze, Anika, Iranzadeh, Arash, Lambisia, Arnold, Ismail, Arshad, Rosemary, Audu, Sylverken, Augustina, Femi, Ayoade, Ibrahimi, Azeddine, Marycelin, Baba, Oderinde, Bamidele S., Bolajoko, Bankole, Dhaala, Beatrice, Herring, Belinda L., Njanpop-Lafourcade, Berthe-Marie, Kleinhans, Bronwyn, McInnis, Bronwyn, Tegomoh, Bryan, Brook, Cara, Pratt, Catherine B., Scheepers, Cathrine, Akoua-Koffi, Chantal G., Agoti, Charles N., Peyrefitte, Christophe, Daubenberger, Claudia, Morang'a, Collins M., Nokes, D. James, Amoako, Daniel G., Bugembe, Daniel L., Park, Danny, Baker, David, Doolabh, Deelan, Ssemwanga, Deogratius, Tshiabuila, Derek, Bassirou, Diarra, Amuzu, Dominic S. Y., Goedhals, Dominique, Omuoyo, Donwilliams O., Maruapula, Dorcas, Foster-Nyarko, Ebenezer, Lusamaki, Eddy K., Simulundu, Edgar, Ong'era, Edidah M., Ngabana, Edith N., Shumba, Edwin, El Fahime, Elmostafa, Lokilo, Emmanuel, Mukantwari, Enatha, Philomena, Eromon, Belarbi, Essia, Simon-Loriere, Etienne, Anoh, Etile A., Leendertz, Fabian, Ajili, Faida, Enoch, Fakayode O., Wasfi, Fares, Abdelmoula, Fatma, Mosha, Fausta S., Takawira, Faustinos T., Derrar, Fawzi, Bouzid, Feriel, Onikepe, Folarin, Adeola, Fowotade, Muyembe, Francisca M., Tanser, Frank, Dratibi, Fred A., Mbunsu, Gabriel K.

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Strain and serovar variants of Salmonella enterica exhibit diverse tolerance to food chain-related stress von Pye, Hannah V., Thilliez, Gaёtan, Acton, Luke, Kolenda, Rafał, Al-Khanaq, Haider, Grove, Stephen, Kingsley, Robert A.

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The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance von Tegally, Houriiyah, San, James E, Cotten, Matthew, Moir, Monika, Tegomoh, Bryan, Mboowa, Gerald, Martin, Darren P, Baxter, Cheryl, Lambisia, Arnold W, Diallo, Amadou, Amoako, Daniel G, Diagne, Moussa M, Sisay, Abay, Zekri, Abdel-Rahman N, Gueye, Abdou Salam, Sangare, Abdoul K, Ouedraogo, Abdoul-Salam, Sow, Abdourahmane, Musa, Abdualmoniem O, Sesay, Abdul K, Abias, Abe G, Elzagheid, Adam I, Lagare, Adamou, Kemi, Adedotun-Sulaiman, Abar, Aden Elmi, Johnson, Adeniji A, Fowotade, Adeola, Oluwapelumi, Adeyemi O, Amuri, Adrienne A, Juru, Agnes, Kandeil, Ahmed, Mostafa, Ahmed, Rebai, Ahmed, Sayed, Ahmed, Kazeem, Akano, Balde, Aladje, Christoffels, Alan, Trotter, Alexander J, Campbell, Allan, Keita, Alpha K, Kone, Amadou, Bouzid, Amal, Souissi, Amal, Agweyu, Ambrose, Naguib, Amel, Gutierrez, Ana V, Nkeshimana, Anatole, Page, Andrew J, Yadouleton, Anges, Vinze, Anika, Happi, Anise N, Chouikha, Anissa, Iranzadeh, Arash, Maharaj, Arisha, Batchi-Bouyou, Armel L, Ismail, Arshad, Sylverken, Augustina A, Goba, Augustine, Femi, Ayoade, Sijuwola, Ayotunde E, Marycelin, Baba, Salako, Babatunde L, Oderinde, Bamidele S, Bolajoko, Bankole, Diarra, Bassirou, Herring, Belinda L, Tsofa, Benjamin, Lekana-Douki, Bernard, Mvula, Bernard, Njanpop-Lafourcade, Berthe-Marie, Marondera, Blessing T, Khaireh, Bouh Abdi, Kouriba, Bourema, Adu, Bright, Pool, Brigitte, McInnis, Bronwyn, Brook, Cara, Williamson, Carolyn, Nduwimana, Cassien, Anscombe, Catherine, Pratt, Catherine B, Scheepers, Cathrine, Akoua-Koffi, Chantal G, Agoti, Charles N, Mapanguy, Chastel M, Loucoubar, Cheikh, Onwuamah, Chika K, Ihekweazu, Chikwe, Malaka, Christian N, Peyrefitte, Christophe, Grace, Chukwa, Omoruyi, Chukwuma E, Rafaï, Clotaire D, Morang'a, Collins M, Erameh, Cyril, Lule, Daniel B, Bridges, Daniel J, Mukadi-Bamuleka, Daniel, Park, Danny, Rasmussen, David A

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