Homologous Recombination Deficiency and Platinum-Based Therapy Outcomes in Advanced Breast Cancer von Zhao, Eric Y, Shen, Yaoqing, Pleasance, Erin, Kasaian, Katayoon, Leelakumari, Sreeja, Jones, Martin, Bose, Pinaki, Ch'ng, Carolyn, Reisle, Caralyn, Eirew, Peter, Corbett, Richard, Mungall, Karen L, Thiessen, Nina, Ma, Yussanne, Schein, Jacqueline E, Mungall, Andrew J, Zhao, Yongjun, Moore, Richard A, Den Brok, Wendie, Wilson, Sheridan, Villa, Diego, Shenkier, Tamara, Lohrisch, Caroline, Chia, Stephen, Yip, Stephen, Gelmon, Karen, Lim, Howard, Renouf, Daniel, Sun, Sophie, Schrader, Kasmintan A, Young, Sean, Bosdet, Ian, Karsan, Aly, Laskin, Janessa, Marra, Marco A, Jones, Steven J M

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Conserved role of intragenic DNA methylation in regulating alternative promoters von Maunakea, Alika K., Nagarajan, Raman P., Bilenky, Mikhail, Ballinger, Tracy J., D’Souza, Cletus, Fouse, Shaun D., Johnson, Brett E., Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M., Rowitch, David H., Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J. M., Haussler, David, Marra, Marco A., Hirst, Martin, Wang, Ting, Costello, Joseph F.

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing von Jones, Steven, Robertson, Gordon, Hirst, Martin, Bainbridge, Matthew, Bilenky, Misha, Zhao, Yongjun, Zeng, Thomas, Euskirchen, Ghia, Bernier, Bridget, Varhol, Richard, Delaney, Allen, Thiessen, Nina, Griffith, Obi L, He, Ann, Marra, Marco, Snyder, Michael

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Identification and characterization of Hoxa9 binding sites in hematopoietic cells von Huang, Yongsheng, Sitwala, Kajal, Bronstein, Joel, Sanders, Daniel, Dandekar, Monisha, Collins, Cailin, Robertson, Gordon, MacDonald, James, Cezard, Timothee, Bilenky, Misha, Thiessen, Nina, Zhao, Yongjun, Zeng, Thomas, Hirst, Martin, Hero, Alfred, Jones, Steven, Hess, Jay L.

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Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways von Chun, Hye-Jung E., Lim, Emilia L., Heravi-Moussavi, Alireza, Saberi, Saeed, Mungall, Karen L., Bilenky, Mikhail, Carles, Annaick, Tse, Kane, Shlafman, Inna, Zhu, Kelsey, Qian, Jenny Q., Palmquist, Diana L., He, An, Long, William, Goya, Rodrigo, Ng, Michelle, LeBlanc, Veronique G., Pleasance, Erin, Thiessen, Nina, Wong, Tina, Chuah, Eric, Zhao, Yong-Jun, Schein, Jacquie E., Gerhard, Daniela S., Taylor, Michael D., Mungall, Andrew J., Moore, Richard A., Ma, Yussanne, Jones, Steven J.M., Perlman, Elizabeth J., Hirst, Martin, Marra, Marco A.

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Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers von Yip, Stephen, Butterfield, Yaron S, Morozova, Olena, Chittaranjan, Suganthi, Blough, Michael D, An, Jianghong, Birol, Inanc, Chesnelong, Charles, Chiu, Readman, Chuah, Eric, Corbett, Richard, Docking, Rod, Firme, Marlo, Hirst, Martin, Jackman, Shaun, Karsan, Aly, Li, Haiyan, Louis, David N, Maslova, Alexandra, Moore, Richard, Moradian, Annie, Mungall, Karen L, Perizzolo, Marco, Qian, Jenny, Roldan, Gloria, Smith, Eric E, Tamura-Wells, Jessica, Thiessen, Nina, Varhol, Richard, Weiss, Samuel, Wu, Wei, Young, Sean, Zhao, Yongjun, Mungall, Andrew J, Jones, Steven JM, Morin, Gregg B, Chan, Jennifer A, Cairncross, J Gregory, Marra, Marco A

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RhoGAP domain-containing fusions and PPAPDC1A fusions are recurrent and prognostic in diffuse gastric cancer von Yang, Hanna, Hong, Dongwan, Cho, Soo Young, Park, Young Soo, Ko, Woo Ri, Kim, Ju Hee, Hur, Hoon, Lee, Jongkeun, Kim, Su-Jin, Kwon, Sun Young, Lee, Jae-Hyuk, Park, Do Youn, Song, Kyu Sang, Chang, Heekyung, Ryu, Min-Hee, Cho, Kye Soo, Kang, Jeong Won, Kook, Myeong-Cherl, Thiessen, Nina, He, An, Mungall, Andy, Han, Sang-Uk, Kim, Hark Kyun

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Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation von Alder, Olivia, Cullum, Rebecca, Lee, Sam, Kan, Arohumam C, Wei, Wei, Yi, Yuyin, Garside, Victoria C, Bilenky, Misha, Griffith, Malachi, Morrissy, A Sorana, Robertson, Gordon A, Thiessen, Nina, Zhao, Yongjun, Chen, Qian, Pan, Duojia, Jones, Steven J M, Marra, Marco A, Hoodless, Pamela A

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Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding von Robertson, A Gordon, Bilenky, Mikhail, Tam, Angela, Zhao, Yongjun, Zeng, Thomas, Thiessen, Nina, Cezard, Timothee, Fejes, Anthony P, Wederell, Elizabeth D, Cullum, Rebecca, Euskirchen, Ghia, Krzywinski, Martin, Birol, Inanc, Snyder, Michael, Hoodless, Pamela A, Hirst, Martin, Marra, Marco A, Jones, Steven J M

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JAGuaR: junction alignments to genome for RNA-seq reads von Butterfield, Yaron S, Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D, Li, Yisu, Pang, Johnson, Ma, Yussanne P, Jones, Steven J M, Birol, İnanç

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing von Wederell, Elizabeth D, Bilenky, Mikhail, Cullum, Rebecca, Thiessen, Nina, Dagpinar, Melis, Delaney, Allen, Varhol, Richard, Zhao, YongJun, Zeng, Thomas, Bernier, Bridget, Ingham, Matthew, Hirst, Martin, Robertson, Gordon, Marra, Marco A, Jones, Steven, Hoodless, Pamela A

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SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing von GERALDES, ARMANDO, PANG, JOHNSON, THIESSEN, NINA, CEZARD, TIMOTHEE, MOORE, RICHARD, ZHAO, YONGJUN, TAM, ANGELA, WANG, SHUCAI, FRIEDMANN, MICHAEL, BIROL, INANC, JONES, STEVEN J.M, CRONK, QUENTIN C.B, DOUGLAS, CARL J

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Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver von Hoffman, Brad G, Robertson, Gordon, Zavaglia, Bogard, Beach, Mike, Cullum, Rebecca, Lee, Sam, Soukhatcheva, Galina, Li, Leping, Wederell, Elizabeth D, Thiessen, Nina, Bilenky, Mikhail, Cezard, Timothee, Tam, Angela, Kamoh, Baljit, Birol, Inanc, Dai, Derek, Zhao, Yongjun, Hirst, Martin, Verchere, C Bruce, Helgason, Cheryl D, Marra, Marco A, Jones, Steven J M, Hoodless, Pamela A

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Complete genomic landscape of a recurring sporadic parathyroid carcinoma von Kasaian, Katayoon, Wiseman, Sam M, Thiessen, Nina, Mungall, Karen L, Corbett, Richard D, Qian, Jenny Q, Nip, Ka Ming, He, Ann, Tse, Kane, Chuah, Eric, Varhol, Richard J, Pandoh, Pawan, McDonald, Helen, Zeng, Thomas, Tam, Angela, Schein, Jacquie, Birol, Inanc, Mungall, Andrew J, Moore, Richard A, Zhao, Yongjun, Hirst, Martin, Marra, Marco A, Walker, Blair A, Jones, Steven JM

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Cell of Origin in AML: Susceptibility to MN1-Induced Transformation Is Regulated by the MEIS1/AbdB-like HOX Protein Complex von Heuser, Michael, Yun, Haiyang, Berg, Tobias, Yung, Eric, Argiropoulos, Bob, Kuchenbauer, Florian, Park, Gyeongsin, Hamwi, Iyas, Palmqvist, Lars, Lai, Courteney K., Leung, Malina, Lin, Grace, Chaturvedi, Anuhar, Thakur, Basant Kumar, Iwasaki, Masayuki, Bilenky, Mikhail, Thiessen, Nina, Robertson, Gordon, Hirst, Martin, Kent, David, Wilson, Nicola K., Göttgens, Bertie, Eaves, Connie, Cleary, Michael L., Marra, Marco, Ganser, Arnold, Humphries, R. Keith

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Publisher Correction: Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma von Koche, Richard P., Rodriguez-Fos, Elias, Helmsauer, Konstantin, Burkert, Martin, MacArthur, Ian C., Maag, Jesper, Chamorro, Rocio, Munoz-Perez, Natalia, Puiggròs, Montserrat, Garcia, Heathcliff Dorado, Bei, Yi, Röefzaad, Claudia, Bardinet, Victor, Szymansky, Annabell, Winkler, Annika, Thole, Theresa, Timme, Natalie, Kasack, Katharina, Fuchs, Steffen, Klironomos, Filippos, Thiessen, Nina, Blanc, Eric, Schmelz, Karin, Künkele, Annette, Hundsdörfer, Patrick, Rosswog, Carolina, Theissen, Jessica, Beule, Dieter, Deubzer, Hedwig, Sauer, Sascha, Toedling, Joern, Fischer, Matthias, Hertwig, Falk, Schwarz, Roland F., Eggert, Angelika, Torrents, David, Schulte, Johannes H., Henssen, Anton G.

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miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer von Pan, Yinghong, Robertson, Gordon, Pedersen, Lykke, Lim, Emilia, Hernandez-Herrera, Anadulce, Rowat, Amy C, Patil, Sagar L, Chan, Clara K, Wen, Yunfei, Zhang, Xinna, Basu-Roy, Upal, Mansukhani, Alka, Chu, Andy, Sipahimalani, Payal, Bowlby, Reanne, Brooks, Denise, Thiessen, Nina, Coarfa, Cristian, Ma, Yussanne, Moore, Richard A, Schein, Jacquie E, Mungall, Andrew J, Liu, Jinsong, Pecot, Chad V, Sood, Anil K, Jones, Steven J M, Marra, Marco A, Gunaratne, Preethi H

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Mutational topography reflects clinical neuroblastoma heterogeneity von Rodriguez-Fos, Elias, Planas-Fèlix, Mercè, Burkert, Martin, Puiggròs, Montserrat, Toedling, Joern, Thiessen, Nina, Blanc, Eric, Szymansky, Annabell, Hertwig, Falk, Ishaque, Naveed, Beule, Dieter, Torrents, David, Eggert, Angelika, Koche, Richard P., Schwarz, Roland F., Haase, Kerstin, Schulte, Johannes H., Henssen, Anton G.

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System-Level Analysis of Neuroblastoma Tumor―Initiating Cells Implicates AURKB as a Novel Drug Target for Neuroblastoma von MOROZOVA, Olena, VOJVODIC, Milijana, SMITH, Kristen M, MILLER, Freda, TAYLOR, Paul, THIESSEN, Nina, VARHOL, Richard, YONGJUN ZHAO, JONES, Steven, MOFFAT, Jason, KISLINGER, Thomas, MORAN, Michael F, GRINSHTEIN, Natalie, KAPLAN, David R, MARRA, Marco A, HANSFORD, Loen M, BLAKELY, Kim M, MASLOVA, Alexandra, HIRST, Martin, CEZARD, Timothee, MORIN, Ryan D, MOORE, Richard

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Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma von Thibodeau, My Linh, Bonakdar, Melika, Zhao, Eric, Mungall, Karen L., Reisle, Caralyn, Zhang, Wei, Bye, Morgan H., Thiessen, Nina, Bleile, Dustin, Mungall, Andrew J., Ma, Yussanne P., Jones, Martin R., Renouf, Daniel J., Lim, Howard J., Yip, Stephen, Ng, Tony, Ho, Cheryl, Laskin, Janessa, Marra, Marco A., Schrader, Kasmintan A., Jones, Steven J. M.

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