adegenet: a R package for the multivariate analysis of genetic markers von Jombart, Thibaut

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adegenet 1.3-1: new tools for the analysis of genome-wide SNP data von Jombart, Thibaut, Ahmed, Ismaïl

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When are pathogen genome sequences informative of transmission events? von Campbell, Finlay, Strang, Camilla, Ferguson, Neil, Cori, Anne, Jombart, Thibaut

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How to measure and test phylogenetic signal von Münkemüller, Tamara, Lavergne, Sébastien, Bzeznik, Bruno, Dray, Stéphane, Jombart, Thibaut, Schiffers, Katja, Thuiller, Wilfried

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outbreaker2: a modular platform for outbreak reconstruction von Campbell, Finlay, Didelot, Xavier, Fitzjohn, Rich, Ferguson, Neil, Cori, Anne, Jombart, Thibaut

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Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data von Campbell, Finlay, Cori, Anne, Ferguson, Neil, Jombart, Thibaut

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adephylo: new tools for investigating the phylogenetic signal in biological traits von Jombart, Thibaut, Balloux, François, Dray, Stéphane

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treespace: Statistical exploration of landscapes of phylogenetic trees von Jombart, Thibaut, Kendall, Michelle, Almagro‐Garcia, Jacob, Colijn, Caroline

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Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data von Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil

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Sorting out assortativity: When can we assess the contributions of different population groups to epidemic transmission? von Geismar, Cyril, White, Peter J, Cori, Anne, Jombart, Thibaut

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Key data for outbreak evaluation: building on the Ebola experience von Cori, Anne, Donnelly, Christl A., Dorigatti, Ilaria, Ferguson, Neil M., Fraser, Christophe, Garske, Tini, Jombart, Thibaut, Nedjati-Gilani, Gemma, Nouvellet, Pierre, Riley, Steven, Van Kerkhove, Maria D., Mills, Harriet L., Blake, Isobel M.

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Discriminant analysis of principal components: a new method for the analysis of genetically structured populations von Jombart, Thibaut, Devillard, Sébastien, Balloux, François

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A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies von Cori, Anne, Nouvellet, Pierre, Garske, Tini, Bourhy, Hervé, Nakouné, Emmanuel, Jombart, Thibaut

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A mathematical model of Marburg virus disease outbreaks and the potential role of vaccination in control von Qian, George Y, Edmunds, W John, Bausch, Daniel G, Jombart, Thibaut

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Deciphering the complex: Methodological overview of statistical models to derive OMICS-based biomarkers von Chadeau-Hyam, Marc, Campanella, Gianluca, Jombart, Thibaut, Bottolo, Leonardo, Portengen, Lutzen, Vineis, Paolo, Liquet, Benoit, Vermeulen, Roel C.H.

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Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation von Balloux, François, Handley, Lori-Jayne Lawson, Jombart, Thibaut, Liu, Hua, Manica, Andrea

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Epidemic curves made easy using the R package incidence [version 1; peer review: 1 approved, 2 approved with reservations] von Kamvar, Zhian N, Cai, Jun, Pulliam, Juliet R.C, Schumacher, Jakob, Jombart, Thibaut

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COVID-19 length of hospital stay: a systematic review and data synthesis von Rees, Eleanor M, Nightingale, Emily S, Jafari, Yalda, Waterlow, Naomi R, Clifford, Samuel, B Pearson, Carl A, Group, Cmmid Working, Jombart, Thibaut, Procter, Simon R, Knight, Gwenan M

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Assessing the feasibility of Phase 3 vaccine trials against Marburg Virus Disease: A modelling study von Qian, George Y., Jombart, Thibaut, John Edmunds, W.

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Patterns and dynamics of genetic diversity in Plasmodium falciparum : What past human migrations tell us about malaria von Mita, Toshihiro, Jombart, Thibaut

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