HIV-1 Subtype Is an Independent Predictor of Reverse Transcriptase Mutation K65R in HIV-1 Patients Treated with Combination Antiretroviral Therapy Including Tenofovir von THEYS, K, VERCAUTEREN, J, GROSSMAN, Z, STRUCK, D, VANDAMME, A.-M, ABECASIS, A. B, SNOECK, J, ZAZZI, M, CAMACHO, R. J, TORTI, C, SCHÜLTER, E, CLOTET, B, SÖNNERBORG, A, DE LUCA, A

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Predicted residual activity of rilpivirine in HIV-1 infected patients failing therapy including NNRTIs efavirenz or nevirapine von Theys, K., Camacho, R.J., Gomes, P., Vandamme, A.M., Rhee, S.Y.

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Resistance pathways of human immunodeficiency virus type 1 against the combination of zidovudine and lamivudine von Theys, K, Deforche, K, Libin, P, Camacho, R J, Van Laethem, K, Vandamme, A-M

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Decreasing population selection rates of resistance mutation K65R over time in HIV-1 patients receiving combination therapy including tenofovir von Theys, K, Snoeck, J, Vercauteren, J, Abecasis, A B, Vandamme, A-M, Camacho, R J

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PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context von Libin, Pieter, Vanden Eynden, Ewout, Incardona, Francesca, Nowé, Ann, Bezenchek, Antonia, Sönnerborg, Anders, Vandamme, Anne-Mieke, Theys, Kristof, Baele, Guy

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Predicted residual activity of rilpivirine in HIV-1 infected patients failing therapy including NNRTIs efavirenz or nevirapine: Virology von Theys, K, Camacho, R J, Gomes, P, Vandamme, A M, Rhee, SY

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CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba von Kouri, Vivian, Khouri, Ricardo, Alemán‬, Yoan, Abrahantes, Yeissel, Vercauteren, Jurgen, Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Megens, Sarah, Moutschen, Michel, Pfeifer, Nico, Van Weyenbergh, Johan, Pérez, Ana B., Pérez, Jorge, Pérez, Lissette, Van Laethem, Kristel, Vandamme, Anne-Mieke

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RegaDB: community-driven data management and analysis for infectious diseases von Libin, P., Beheydt, G., Deforche, K., Imbrechts, S., Ferreira, F., Van Laethem, K., Theys, K., Carvalho, A. P., Cavaco-Silva, J., Lapadula, G., Torti, C., Assel, M., Wesner, S., Snoeck, J., Ruelle, J., De Bel, A., Lacor, P., De Munter, P., Van Wijngaerden, E., Zazzi, M., Kaiser, R., Ayouba, A., Peeters, M., de Oliveira, T., Alcantara, L. C. J., Grossman, Z., Sloot, P., Otelea, D., Paraschiv, S., Boucher, C., Camacho, R. J., Vandamme, A.-M.

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Covering all bases in HIV research: unveiling a hidden world of viral evolution von Vrancken, Bram, Lequime, Sébastian, Theys, Kristof, Lemey, Philippe

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Interactively exploring the global Dengue phylogeny with PhyloGeoTool von Libin, PJK, Vanden Eynden, E, Incardona, F, Nowe, A, Bezenchek, A, Sonnerborg, A, Vandamme, A, Theys, K, Baele, G

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HIV-1 fitness landscape models for indinavir treatment pressure using observed evolution in longitudinal sequence data are predictive for treatment failure von Sangeda, Raphael Z., Theys, Kristof, Beheydt, Gertjan, Rhee, Soo-Yon, Deforche, Koen, Vercauteren, Jurgen, Libin, Pieter, Imbrechts, Stijn, Grossman, Zehava, Camacho, Ricardo J., Van Laethem, Kristel, Pironti, Alejandro, Zazzi, Maurizio, Sönnerborg, Anders, Incardona, Francesca, De Luca, Andrea, Torti, Carlo, Ruiz, Lidia, Van de Vijver, David A.M.C., Shafer, Robert W., Bruzzone, Bianca, Van Wijngaerden, Eric, Vandamme, Anne-Mieke

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Modelled in vivo HIV fitness under drug selective pressure and estimated genetic barrier towards resistance are predictive for virological response von DEFORCHE, Koen, COZZI-LEPRI, Alessandro, VANDAMME, Anne-Mieke, THEYS, Kristof, CLOTET, Bonaventura, CAMACHO, Ricardo J, KJAER, Jesper, VAN LAETHEM, Kristel, PHILLIPS, Andrew, MOREAU, Yves, LUNDGREN, Jens D

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Understanding the changing prevalence of K65R von Theys, Kristof, Vandamme, Anne-Mieke

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Genome-wide diversity of Zika virus: exploring spatio-temporal dynamics to guide a new nomenclature proposal von Seabra, S.G., Libin, P.J.K., Theys, K., Zhukova, A., Potter, B.I., Nebenzahl-Guimaraes, H., Gorbalenya, A.E., Sidorov, I.A., Pimentel, V., Pingarilho, M., Vasconcelos, A.T.R. de, Dellicour, S., Khouri, R., Gascuel, O., Vandamme, A.M., Baele, G., Cuypers, L., Abecasis, A.B.

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HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012 von Pineda-Peña, AC, Theys, K, Stylianou, DC, Demetriades, I, Puchhammer, E, Vandamme, AM, Aleksiev, I, Lepej, SZ, Linka, M, Fonager, J, Liitsola, K, Kaiser, R, Hamouda, O, Paraskevis, D, Coughlan, S, Grossman, Z, Mor, O, Zazzi, M, Griskevicius, A, Lipnickiene, V, Devaux, C, Boucher, C, Hofstra, M, Wensing, A, Bakken-Kran, AM, Horban, A, Camacho, R, Paraschiv, S, Otelea, D, Stanojevic, M, Stanekova, D, Poljak, M, Garcia, F, Paredes, R, Albert, J, Abecasis, AB, Kostrikis, LG

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Global nitrous acid emissions and levels of regional oxidants enhanced by wildfires von Theys, N., Volkamer, R., Müller, J.-F., Zarzana, K. J., Kille, N., Clarisse, L., De Smedt, I., Lerot, C., Finkenzeller, H., Hendrick, F., Koenig, T. K., Lee, C. F., Knote, C., Yu, H., Van Roozendael, M.

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Sector‐Based Top‐Down Estimates of NOx, SO2, and CO Emissions in East Asia von Qu, Zhen, Henze, Daven K., Worden, Helen M., Jiang, Zhe, Gaubert, Benjamin, Theys, Nicolas, Wang, Wei

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VIRULIGN: fast codon-correct alignment and annotation of viral genomes von Libin, Pieter J K, Deforche, Koen, Abecasis, Ana B, Theys, Kristof

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An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors von Theys, Kristof, Libin, Pieter J K, Van Laethem, Kristel, Abecasis, Ana B

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Overview of the O3M SAF GOME-2 operational atmospheric composition and UV radiation data products and data availability von Hassinen, S, Balis, D, Bauer, H, Begoin, M, Delcloo, A, Eleftheratos, K, Gimeno Garcia, S, Granville, J, Grossi, M, Hao, N, Hedelt, P, Hendrick, F, Hess, M, Heue, K.-P, Hovila, J, Jønch-Sørensen, H, Kalakoski, N, Kauppi, A, Kiemle, S, Kins, L, Koukouli, M. E, Kujanpää, J, Lambert, J.-C, Lang, R, Lerot, C, Loyola, D, Pedergnana, M, Pinardi, G, Romahn, F, van Roozendael, M, Lutz, R, De Smedt, I, Stammes, P, Steinbrecht, W, Tamminen, J, Theys, N, Tilstra, L. G, Tuinder, O. N. E, Valks, P, Zerefos, C, Zimmer, W, Zyrichidou, I

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