A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information von Le, Nguyen Quoc Khanh, Ho, Quang-Thai, Nguyen, Trinh-Trung-Duong, Ou, Yu-Yen

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Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins von Le, Nguyen‐Quoc‐Khanh, Ho, Quang‐Thai, Ou, Yu‐Yen

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Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre‐trained language models von Ou, Yu‐Yen, Ho, Quang‐Thai, Chang, Heng‐Ta

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Behavior of blood plasma glycan features in bladder cancer von Ferdosi, Shadi, Ho, Thai H, Castle, Erik P, Stanton, Melissa L, Borges, Chad R

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Dual Chromatin and Cytoskeletal Remodeling by SETD2 von Park, In Young, Powell, Reid T., Tripathi, Durga Nand, Dere, Ruhee, Ho, Thai H., Blasius, T. Lynne, Chiang, Yun-Chen, Davis, Ian J., Fahey, Catherine C., Hacker, Kathryn E., Verhey, Kristen J., Bedford, Mark T., Jonasch, Eric, Rathmell, W. Kimryn, Walker, Cheryl Lyn

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Androgen Receptor Variant AR-V9 Is Coexpressed with AR-V7 in Prostate Cancer Metastases and Predicts Abiraterone Resistance von Kohli, Manish, Ho, Yeung, Hillman, David W, Van Etten, Jamie L, Henzler, Christine, Yang, Rendong, Sperger, Jamie M, Li, Yingming, Tseng, Elizabeth, Hon, Ting, Clark, Tyson, Tan, Winston, Carlson, Rachel E, Wang, Liguo, Sicotte, Hugues, Thai, Ho, Jimenez, Rafael, Huang, Haojie, Vedell, Peter T, Eckloff, Bruce W, Quevedo, Jorge F, Pitot, Henry C, Costello, Brian A, Jen, Jin, Wieben, Eric D, Silverstein, Kevin A T, Lang, Joshua M, Wang, Liewei, Dehm, Scott M

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The histone H3.3K36M mutation reprograms the epigenome of chondroblastomas von Fang, Dong, Gan, Haiyun, Lee, Jeong-Heon, Han, Jing, Wang, Zhiquan, Riester, Scott M., Jin, Long, Chen, Jianji, Zhou, Hui, Wang, Jinglong, Zhang, Honglian, Yang, Na, Bradley, Elizabeth W., Ho, Thai H., Rubin, Brian P., Bridge, Julia A., Thibodeau, Stephen N., Ordog, Tamas, Chen, Yue, van Wijnen, Andre J., Oliveira, Andre M., Xu, Rui-Ming, Westendorf, Jennifer J., Zhang, Zhiguo

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Cancer associated macrophage-like cells in metastatic renal cell carcinoma predicts for poor prognosis and tracks treatment response in real time von Ali, Amama, Adams, Daniel L., Kasabwala, Dimpal M., Tang, Cha-Mei, Ho, Thai H.

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Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks von Le, Nguyen-Quoc-Khanh, Ho, Quang-Thai, Ou, Yu-Yen

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Inhibition of intracellular lipolysis promotes human cancer cell adaptation to hypoxia von Zhang, Xiaodong, Saarinen, Alicia M, Hitosugi, Taro, Wang, Zhenghe, Wang, Liguo, Ho, Thai H, Liu, Jun

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FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers von Ho, Quang-Thai, Nguyen, Trinh-Trung-Duong, Khanh Le, Nguyen Quoc, Ou, Yu-Yen

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Genomic correlates of response to immune checkpoint therapies in clear cell renal cell carcinoma von Miao, Diana, Margolis, Claire A, Gao, Wenhua, Voss, Martin H, Li, Wei, Martini, Dylan J, Norton, Craig, Bossé, Dominick, Wankowicz, Stephanie M, Cullen, Dana, Horak, Christine, Wind-Rotolo, Megan, Tracy, Adam, Giannakis, Marios, Hodi, Frank Stephen, Drake, Charles G, Ball, Mark W, Allaf, Mohamad E, Snyder, Alexandra, Hellmann, Matthew D, Ho, Thai, Motzer, Robert J, Signoretti, Sabina, Kaelin, Jr, William G, Choueiri, Toni K, Van Allen, Eliezer M

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Trends in Renal-Cell Carcinoma Incidence and Mortality in the United States in the Last 2 Decades: A SEER-Based Study von Saad, Anas M., Gad, Mohamed M., Al-Husseini, Muneer J., Ruhban, Inas A., Sonbol, Mohamad Bassam, Ho, Thai H.

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mCNN-ETC: identifying electron transporters and their functional families by using multiple windows scanning techniques in convolutional neural networks with evolutionary informati... von Ho, Quang-Thai, Le, Nguyen Quoc Khanh, Ou, Yu-Yen

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Using multiple convolutional window scanning of convolutional neural network for an efficient prediction of ATP‐binding sites in transport proteins von Nguyen, Trinh‐Trung‐Duong, Chen, Syun, Ho, Quang‐Thai, Ou, Yu‐Yen

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A Living, Interactive Systematic Review and Network Meta-analysis of First-line Treatment of Metastatic Renal Cell Carcinoma von Riaz, Irbaz Bin, He, Huan, Ryu, Alexander J., Siddiqi, Rabbia, Naqvi, Syed Arsalan Ahmed, Yao, Yuan, Husnain, Muhammad, Narasimhulu, Deepa Maheswari, Mathew, Jessey, Sipra, Qurat Ul Ain Riaz, Vandvik, Per Olav, Joseph, Richard W., Liu, Hongfang, Wang, Zhen, Herasevich, Vitaly, Singh, Parminder, Hussain, Syed A., Ho, Thai H., Bryce, Alan H., Pagliaro, Lance C., Murad, Mohammad H., Costello, Brian A.

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Correlation of PD-L1 tumor expression and treatment outcomes in patients with renal cell carcinoma receiving sunitinib or pazopanib: results from COMPARZ, a randomized controlled t... von Choueiri, Toni K, Figueroa, David J, Fay, André P, Signoretti, Sabina, Liu, Yuan, Gagnon, Robert, Deen, Keith, Carpenter, Christopher, Benson, Peter, Ho, Thai H, Pandite, Lini, de Souza, Paul, Powles, Thomas, Motzer, Robert J

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Clear Cell Renal Cell Carcinoma Subtypes Identified by BAP1 and PBRM1 Expression von Joseph, Richard W, Kapur, Payal, Serie, Daniel J, Parasramka, Mansi, Ho, Thai H, Cheville, John C, Frenkel, Eugene, Parker, Alexander S, Brugarolas, James

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DeepETC: A deep convolutional neural network architecture for investigating and classifying electron transport chain's complexes von Le, Nguyen Quoc Khanh, Ho, Quang-Thai, Yapp, Edward Kien Yee, Ou, Yu-Yen, Yeh, Hui-Yuan

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MTAP deficiency creates an exploitable target for antifolate therapy in 9p21-loss cancers von Alhalabi, Omar, Chen, Jianfeng, Zhang, Yuxue, Lu, Yang, Wang, Qi, Ramachandran, Sumankalai, Tidwell, Rebecca Slack, Han, Guangchun, Yan, Xinmiao, Meng, Jieru, Wang, Ruiping, Hoang, Anh G., Wang, Wei-Lien, Song, Jian, Lopez, Lidia, Andreev-Drakhlin, Alex, Siefker-Radtke, Arlene, Zhang, Xinqiao, Benedict, William F., Shah, Amishi Y., Wang, Jennifer, Msaouel, Pavlos, Zhang, Miao, Guo, Charles C., Czerniak, Bogdan, Behrens, Carmen, Soto, Luisa, Papadimitrakopoulou, Vassiliki, Lewis, Jeff, Rinsurongkawong, Waree, Rinsurongkawong, Vadeerat, Lee, Jack, Roth, Jack, Swisher, Stephen, Wistuba, Ignacio, Heymach, John, Wang, Jing, Campbell, Matthew T., Efstathiou, Eleni, Titus, Mark, Logothetis, Christopher J., Ho, Thai H., Zhang, Jianjun, Wang, Linghua, Gao, Jianjun

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