An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics von Taylor, Ronald C

Volltext

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling von Castelle, Cindy J, Wrighton, Kelly C, Thomas, Brian C, Hug, Laura A, Brown, Christopher T, Wilkins, Michael J, Frischkorn, Kyle R, Tringe, Susannah G, Singh, Andrea, Markillie, Lye Meng, Taylor, Ronald C, Williams, Kenneth H, Banfield, Jillian F

Volltext

The Toxoplasma gondii cyst wall protein CST1 is critical for cyst wall integrity and promotes bradyzoite persistence von Tomita, Tadakimi, Bzik, David J, Ma, Yan Fen, Fox, Barbara A, Markillie, Lye Meng, Taylor, Ronald C, Kim, Kami, Weiss, Louis M

Volltext

Distinct strains of Toxoplasma gondii feature divergent transcriptomes regardless of developmental stage von Croken, Matthew McKnight, Ma, Yanfen, Markillie, Lye Meng, Taylor, Ronald C, Orr, Galya, Weiss, Louis M, Kim, Kami

Volltext

Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 von Deangelis, Kristen M, Sharma, Deepak, Varney, Rebecca, Simmons, Blake, Isern, Nancy G, Markilllie, Lye Meng, Nicora, Carrie, Norbeck, Angela D, Taylor, Ronald C, Aldrich, Joshua T, Robinson, Errol W

Volltext

Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress von Taylor, Ronald C, Acquaah-Mensah, George, Singhal, Mudita, Malhotra, Deepti, Biswal, Shyam

Volltext

Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics von Hess, Becky M, Xue, Junfeng, Markillie, Lye Meng, Taylor, Ronald C, Wiley, H Steven, Ahring, Birgitte K, Linggi, Bryan

Volltext

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach von Lindemann, Stephen R, Mobberley, Jennifer M, Cole, Jessica K, Markillie, L M, Taylor, Ronald C, Huang, Eric, Chrisler, William B, Wiley, H S, Lipton, Mary S, Nelson, William C, Fredrickson, James K, Romine, Margaret F

Volltext

Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium von McDermott, Jason E, Taylor, Ronald C, Yoon, Hyunjin, Heffron, Fred

Volltext

Reconstruction of the regulatory network for Bacillus subtilis and reconciliation with gene expression data von Faria, J., Overbeek, Ross, Taylor, Ronald C, Conrad, Neal, Vonstein, Veronika, Goelzer, Anne, Fromion, Vincent, Rocha, Miguel, Rocha, I., Henry, Christopher Scott

Volltext

Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction von Henry, Christopher S., Bernstein, Hans C., Weisenhorn, Pamela, Taylor, Ronald C., Lee, Joon-Yong, Zucker, Jeremy, Song, Hyun-Seob

Volltext

Computing and applying atomic regulons to understand gene expression and regulation von Faria, J., Davis, James J., Edirisinghe, Janaka N., Taylor, Ronald C., Weisenhorn, Pamela, Olson, Robert D., Stevens, Rick L., Rocha, Miguel, Rocha, Isabel, Best, Aaron A., DeJongh, Matthew, Tintle, Nathan L., Parrello, Bruce, Overbeek, Ross, Henry, Christopher S.

Volltext

A cloud‐based resource for genome coordinate‐based exploration and large‐scale analysis of chromosome aberrations and gene fusions in cancer von Wang, Janet, Zheng, Jeanne, Lee, Elaine E., Aguilar, Boris, Phan, John, Abdilleh, Kawther, Taylor, Ronald C., Longabaugh, William, Johansson, Bertil, Mertens, Fredrik, Mitelman, Felix, Pot, David, LaFramboise, Thomas

Volltext

Brain in situ hybridization maps as a source for reverse-engineering transcriptional regulatory networks: Alzheimer's disease insights von Acquaah-Mensah, George K., Taylor, Ronald C.

Volltext

Highly Conserved MraZ Protein Is a Transcriptional Regulator in Escherichia coli von Eraso, Jesus M, Markillie, Lye M, Mitchell, Hugh D, Taylor, Ronald C, Orr, Galya, Margolin, William

Volltext

Identification of Differential Gene Expression Patterns after Acute Exposure to High and Low Doses of Low-LET Ionizing Radiation in a Reconstituted Human Skin Tissue von Tilton, Susan C., Markillie, Lye Meng, Hays, Spencer, Taylor, Ronald C., Stenoien, David L.

Volltext

SEBINI: Software Environment for BIological Network Inference von Taylor, Ronald C., Shah, Anuj, Treatman, Charles, Blevins, Meridith

Volltext

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002 von McClure, Ryan S, Overall, Christopher C, McDermott, Jason E, Hill, Eric A, Markillie, Lye Meng, McCue, Lee Ann, Taylor, Ronald C, Ludwig, Marcus, Bryant, Donald A, Beliaev, Alexander S

Volltext

Gene set analyses for interpreting microarray experiments on prokaryotic organisms von Tintle, Nathan L, Best, Aaron A, DeJongh, Matthew, Van Bruggen, Dirk, Heffron, Fred, Porwollik, Steffen, Taylor, Ronald C

Volltext

Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq von Mitchell, Hugh D, Markillie, Lye Meng, Chrisler, William B, Gaffrey, Matthew J, Hu, Dehong, Szymanski, Craig J, Xie, Yumei, Melby, Eric S, Dohnalkova, Alice, Taylor, Ronald C, Grate, Eva K, Cooley, Scott K, McDermott, Jason E, Heredia-Langner, Alejandro, Orr, Galya

Volltext