Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates von Piccinini, Filippo, Balassa, Tamas, Carbonaro, Antonella, Diosdi, Akos, Toth, Timea, Moshkov, Nikita, Tasnadi, Ervin A., Horvath, Peter

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3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images von Tasnadi, Ervin A, Toth, Timea, Kovacs, Maria, Diosdi, Akos, Pampaloni, Francesco, Molnar, Jozsef, Piccinini, Filippo, Horvath, Peter

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Automatic deep learning-driven label-free image-guided patch clamp system von Koos, Krisztian, Oláh, Gáspár, Balassa, Tamas, Mihut, Norbert, Rózsa, Márton, Ozsvár, Attila, Tasnadi, Ervin, Barzó, Pál, Faragó, Nóra, Puskás, László, Molnár, Gábor, Molnár, József, Tamás, Gábor, Horvath, Peter

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Nucleus segmentation: towards automated solutions von Hollandi, Reka, Moshkov, Nikita, Paavolainen, Lassi, Tasnadi, Ervin, Piccinini, Filippo, Horvath, Peter

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nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer von Hollandi, Reka, Szkalisity, Abel, Toth, Timea, Tasnadi, Ervin, Molnar, Csaba, Mathe, Botond, Grexa, Istvan, Molnar, Jozsef, Balind, Arpad, Gorbe, Mate, Kovacs, Maria, Migh, Ede, Goodman, Allen, Balassa, Tamas, Koos, Krisztian, Wang, Wenyu, Caicedo, Juan Carlos, Bara, Norbert, Kovacs, Ferenc, Paavolainen, Lassi, Danka, Tivadar, Kriston, Andras, Carpenter, Anne Elizabeth, Smith, Kevin, Horvath, Peter

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Segmentation metric misinterpretations in bioimage analysis von Hirling, Dominik, Tasnadi, Ervin, Caicedo, Juan, Caroprese, Maria V., Sjögren, Rickard, Aubreville, Marc, Koos, Krisztian, Horvath, Peter

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Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation von Serra, Angela, Fratello, Michele, Federico, Antonio, Ojha, Ravi, Provenzani, Riccardo, Tasnadi, Ervin, Cattelani, Luca, del Giudice, Giusy, Kinaret, Pia A S, Saarimäki, Laura A, Pavel, Alisa, Kuivanen, Suvi, Cerullo, Vincenzo, Vapalahti, Olli, Horvath, Peter, Lieto, Antonio Di, Yli-Kauhaluoma, Jari, Balistreri, Giuseppe, Greco, Dario

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Structure preserving adversarial generation of labeled training samples for single-cell segmentation von Tasnadi, Ervin, Sliz-Nagy, Alex, Horvath, Peter

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mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate von Turek, Cezary, Ölbei, Márton, Stirling, Tamás, Fekete, Gergely, Tasnádi, Ervin, Gul, Leila, Bohár, Balázs, Papp, Balázs, Jurkowski, Wiktor, Ari, Eszter

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Open-Source Tools for Volume Estimation of 3D Multicellular Aggregates von De Santis, Ilaria, Tasnadi, Ervin, Horvath, Peter, Bevilacqua, Alessandro, Piccinini, Filippo

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Novel -linked sialoglycan structures in human urinary glycoproteins von Pap, Adam, Tasnadi, Ervin, Medzihradszky, Katalin F, Darula, Zsuzsanna

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Novel O-linked sialoglycan structures in human urinary glycoproteins von Pap, Adam, Tasnadi, Ervin, Medzihradszky, Katalin F, Darula, Zsuzsanna

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A Balanced Phase Field Model for Active Contours von Molnar, Jozsef, Tasnadi, Ervin, Horvath, Peter

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Structure preserving adversarial generation of labeled training samples for single cell segmentation von Tasnadi, Ervin, Sliz-Nagy, Alex, Horvath, Peter

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Additional file 3 of mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate von Turek, Cezary, Ölbei, Márton, Stirling, Tamás, Fekete, Gergely, Tasnádi, Ervin, Gul, Leila, Bohár, Balázs, Papp, Balázs, Jurkowski, Wiktor, Ari, Eszter

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Additional file 2 of mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate von Turek, Cezary, Ölbei, Márton, Stirling, Tamás, Fekete, Gergely, Tasnádi, Ervin, Gul, Leila, Bohár, Balázs, Papp, Balázs, Jurkowski, Wiktor, Ari, Eszter

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