A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome von Fromm, Bastian, Billipp, Tyler, Peck, Liam E, Johansen, Morten, Tarver, James E, King, Benjamin L, Newcomb, James M, Sempere, Lorenzo F, Flatmark, Kjersti, Hovig, Eivind, Peterson, Kevin J

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Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data von O'Reilly, Joseph E., Puttick, Mark N., Parry, Luke, Tanner, Alastair R., Tarver, James E., Fleming, James, Pisani, Davide, Donoghue, Philip C. J.

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Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies von Patalano, Solenn, Vlasova, Anna, Wyatt, Chris, Ewels, Philip, Camara, Francisco, Ferreira, Pedro G., Asher, Claire L., Jurkowski, Tomasz P., Segonds-Pichon, Anne, Bachman, Martin, González-Navarrete, Irene, Minoche, André E., Krueger, Felix, Lowy, Ernesto, Marcet-Houben, Marina, Rodriguez-Ales, Jose Luis, Nascimento, Fabio S., Balasubramanian, Shankar, Gabaldon, Toni, Tarver, James E., Andrews, Simon, Himmelbauer, Heinz, Hughes, William O. H., Guigó, Roderic, Reik, Wolf, Sumner, Seirian

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The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference von Tarver, James E, Dos Reis, Mario, Mirarab, Siavash, Moran, Raymond J, Parker, Sean, O'Reilly, Joseph E, King, Benjamin L, O'Connell, Mary J, Asher, Robert J, Warnow, Tandy, Peterson, Kevin J, Donoghue, Philip C J, Pisani, Davide

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Do miRNAs have a deep evolutionary history? von Tarver, James E., Donoghue, Philip C. J., Peterson, Kevin J.

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Dinosaurs and the Cretaceous Terrestrial Revolution von Lloyd, Graeme T, Davis, Katie E, Pisani, Davide, Tarver, James E, Ruta, Marcello, Sakamoto, Manabu, Hone, David W.E, Jennings, Rachel, Benton, Michael J

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Unicellular Origin of the Animal MicroRNA Machinery von Bråte, Jon, Neumann, Ralf S., Fromm, Bastian, Haraldsen, Arthur A.B., Tarver, James E., Suga, Hiroshi, Donoghue, Philip C.J., Peterson, Kevin J., Ruiz-Trillo, Iñaki, Grini, Paul E., Shalchian-Tabrizi, Kamran

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NOTUM inhibition increases endocortical bone formation and bone strength von Brommage, Robert, Liu, Jeff, Vogel, Peter, Mseeh, Faika, Thompson, Andrea Y, Potter, David G, Shadoan, Melanie K, Hansen, Gwenn M, Jeter-Jones, Sabrina, Cui, Jie, Bright, Dawn, Bardenhagen, Jennifer P, Doree, Deon D, Movérare-Skrtic, Sofia, Nilsson, Karin H, Henning, Petra, Lerner, Ulf H, Ohlsson, Claes, Sands, Arthur T, Tarver, James E, Powell, David R, Zambrowicz, Brian, Liu, Qingyun

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Stimulation of cortical bone formation with thienopyrimidine based inhibitors of Notum Pectinacetylesterase von Tarver, James E., Pabba, Praveen K., Barbosa, Joseph, Han, Qiang, Gardyan, Michael W., Brommage, Robert, Thompson, Andrea Y., Schmidt, James M., Wilson, Alan G.E., He, Wei, Lombardo, Victoria K., Carson, Kenneth G.

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4H-Thieno[3,2-c]chromene based inhibitors of Notum Pectinacetylesterase von Han, Qiang, Pabba, Praveen K., Barbosa, Joseph, Mabon, Ross, Healy, Jason P., Gardyan, Michael W., Terranova, Kristen M., Brommage, Robert, Thompson, Andrea Y., Schmidt, James M., Wilson, Alan G.E., Xu, Xiaolian, Tarver, James E., Carson, Kenneth G.

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Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data von Puttick, Mark N., O'Reilly, Joseph E., Tanner, Alastair R., Fleming, James F., Clark, James, Holloway, Lucy, Lozano-Fernandez, Jesus, Parry, Luke A., Tarver, James E., Pisani, Davide, Donoghue, Philip C. J.

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Evolutionary history of plant microRNAs von Taylor, Richard S., Tarver, James E., Hiscock, Simon J., Donoghue, Philip C.J.

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Best Practices for Justifying Fossil Calibrations von Parham, James F., Donoghue, Philip C. J., Bell, Christopher J., Calway, Tyler D., Head, Jason J., Holroyd, Patricia A., Inoue, Jun G., Irmis, Randall B., Joyce, Walter G., Ksepka, Daniel T., Patané, José S. L., Smith, Nathan D., Tarver, James E., van Tuinen, Marcel, Yang, Ziheng, Angielczyk, Kenneth D., Greenwood, Jenny M., Hipsley, Christy A., Jacobs, Louis, Makovicky, Peter J., Müller, Johannes, Smith, Krister T., Theodor, Jessica M., Warnock, Rachel C. M., Benton, Michael J.

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Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al von Puttick, Mark N., O'Reilly, Joseph E., Oakley, Derek, Tanner, Alistair R., Fleming, James F., Clark, James, Holloway, Lucy, Lozano-Fernandez, Jesus, Parry, Luke A., Tarver, James E., Pisani, Davide, Donoghue, Philip C. J.

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miRNAs: small genes with big potential in metazoan phylogenetics von Tarver, James E, Sperling, Erik A, Nailor, Audrey, Heimberg, Alysha M, Robinson, Jeffrey M, King, Benjamin L, Pisani, Davide, Donoghue, Philip C J, Peterson, Kevin J

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MicroRNA annotation of plant genomes − Do it right or not at all von Taylor, Richard S., Tarver, James E., Foroozani, Alireza, Donoghue, Philip C. J.

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microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus von Tarver, James E, Cormier, Alexandre, Pinzón, Natalia, Taylor, Richard S, Carré, Wilfrid, Strittmatter, Martina, Seitz, Hervé, Coelho, Susana M, Cock, J Mark

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Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss von Tarver, James E, Taylor, Richard S, Puttick, Mark N, Lloyd, Graeme T, Pett, Walker, Fromm, Bastian, Schirrmeister, Bettina E, Pisani, Davide, Peterson, Kevin J, Donoghue, Philip C J

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Rapid Evolution of microRNA Loci in the Brown Algae von Cock, J Mark, Liu, Fuli, Duan, Delin, Bourdareau, Simon, Lipinska, Agnieszka P, Coelho, Susana M, Tarver, James E

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The Trouble with Topology: Phylogenies without Fossils Provide a Revisionist Perspective of Evolutionary History in Topological Analyses of Diversity von Tarver, James E., Donoghue, Philip C. J.

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