OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more von Altenhoff, Adrian M, Train, Clément-Marie, Gilbert, Kimberly J, Mediratta, Ishita, Mendes de Farias, Tarcisio, Moi, David, Nevers, Yannis, Radoykova, Hale-Seda, Rossier, Victor, Warwick Vesztrocy, Alex, Glover, Natasha M, Dessimoz, Christophe

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Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience von Mendes de Farias, Tarcisio, Wollbrett, Julien, Robinson-Rechavi, Marc, Bastian, Frederic

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Querying knowledge graphs in natural language von Liang, Shiqi, Stockinger, Kurt, de Farias, Tarcisio Mendes, Anisimova, Maria, Gil, Manuel

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Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation von Sima, Ana Claudia, Mendes de Farias, Tarcisio, Anisimova, Maria, Dessimoz, Christophe, Robinson-Rechavi, Marc, Zbinden, Erich, Stockinger, Kurt

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Enabling semantic queries across federated bioinformatics databases von Sima, Ana Claudia, Mendes de Farias, Tarcisio, Zbinden, Erich, Anisimova, Maria, Gil, Manuel, Stockinger, Heinz, Stockinger, Kurt, Robinson-Rechavi, Marc, Dessimoz, Christophe

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Web of venom: exploration of big data resources in animal toxin research von Zancolli, Giulia, von Reumont, Björn Marcus, Anderluh, Gregor, Caliskan, Figen, Chiusano, Maria Luisa, Fröhlich, Jacob, Hapeshi, Evroula, Hempel, Benjamin-Florian, Ikonomopoulou, Maria P, Jungo, Florence, Marchot, Pascale, de Farias, Tarcisio Mendes, Modica, Maria Vittoria, Moran, Yehu, Nalbantsoy, Ayse, Procházka, Jan, Tarallo, Andrea, Tonello, Fiorella, Vitorino, Rui, Zammit, Mark Lawrence, Antunes, Agostinho

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The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals von Bastian, Frederic B, Roux, Julien, Niknejad, Anne, Comte, Aurélie, Fonseca Costa, Sara S, de Farias, Tarcisio Mendes, Moretti, Sébastien, Parmentier, Gilles, de Laval, Valentine Rech, Rosikiewicz, Marta, Wollbrett, Julien, Echchiki, Amina, Escoriza, Angélique, Gharib, Walid H, Gonzales-Porta, Mar, Jarosz, Yohan, Laurenczy, Balazs, Moret, Philippe, Person, Emilie, Roelli, Patrick, Sanjeev, Komal, Seppey, Mathieu, Robinson-Rechavi, Marc

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A rule-based methodology to extract building model views von Farias, Tarcisio Mendes de, Roxin, Ana, Nicolle, Christophe

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A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL [version 1; peer review: 1 approved, 2 approved with reservations] von Sima, Ana Claudia, Dessimoz, Christophe, Stockinger, Kurt, Zahn-Zabal, Monique, Mendes de Farias, Tarcisio

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SWRL rule-selection methodology for ontology interoperability von de Farias, Tarcisio Mendes, Roxin, Ana, Nicolle, Christophe

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Accessing scientific data through knowledge graphs with Ontop von Calvanese, Diego, Lanti, Davide, Mendes De Farias, Tarcisio, Mosca, Alessandro, Xiao, Guohui

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The SIB Swiss Institute of Bioinformatics Semantic Web of data von Altenhoff, Adrian, Bairoch, Amos, Bansal, Parit, Baratin, Delphine, Bastian, Frederic, Bolleman, Jerven, Bridge, Alan, Burdet, Frédéric, Crameri, Katrin, Dauvillier, Jérôme, Dessimoz, Christophe, Gehant, Sebastien, Glover, Natasha, Gnodtke, Kristin, Hayes, Catherine, Ibberson, Mark, Kriventseva, Evgenia, Kuznetsov, Dmitry, Frédérique, Lisacek, Mehl, Florence, Mendes de Farias, Tarcisio, Michel, Pierre-André, Moretti, Sébastien, Morgat, Anne, Österle, Sabine, Pagni, Marco, Redaschi, Nicole, Robinson-Rechavi, Marc, Samarasinghe, Kasun, Sima, Ana-Claudia, Szklarczyk, Damian, Topalov, Orlin, Touré, Vasundra, Unni, Deepak, von Mering, Christian, Wollbrett, Julien, Zahn-Zabal, Monique, Zdobnov, Evgeny

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A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL [version 2; peer review: 3 approved] von Sima, Ana Claudia, Dessimoz, Christophe, Stockinger, Kurt, Zahn-Zabal, Monique, Mendes de Farias, Tarcisio

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INODE: Building an End-to-End Data Exploration System in Practice von Amer-Yahia, Sihem, Koutrika, Georgia, Braschler, Martin, Calvanese, Diego, Lanti, Davide, Lücke-Tieke, Hendrik, Mosca, Alessandro, Mendes de Farias, Tarcisio, Papadopoulos, Dimitris, Patil, Yogendra, Rull, Guillem, Smith, Ellery, Skoutas, Dimitrios, Subramanian, Srividya, Stockinger, Kurt

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VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links von Mendes de Farias, Tarcisio, Stockinger, Kurt, Dessimoz, Christophe

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A performance benchmark over semantic rule checking approaches in construction industry von Pauwels, Pieter, de Farias, Tarcisio Mendes, Zhang, Chi, Roxin, Ana, Beetz, Jakob, De Roo, Jos, Nicolle, Christophe

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Advances and Applications in the Quest for Orthologs von Glover, Natasha, Dessimoz, Christophe, Ebersberger, Ingo, Forslund, Sofia K, Gabaldón, Toni, Huerta-Cepas, Jaime, Martin, Maria-Jesus, Muffato, Matthieu, Patricio, Mateus, Pereira, Cécile, da Silva, Alan Sousa, Wang, Yan, Sonnhammer, Erik, Thomas, Paul D

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Ten Years of Collaborative Progress in the Quest for Orthologs von Linard, Benjamin, Ebersberger, Ingo, McGlynn, Shawn E, Glover, Natasha, Mochizuki, Tomohiro, Patricio, Mateus, Lecompte, Odile, Nevers, Yannis, Thomas, Paul D, Gabaldón, Toni, Sonnhammer, Erik, Dessimoz, Christophe, Uchiyama, Ikuo

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Federating and querying heterogeneous and distributed Web APIs and triple stores von Tarcisio Mendes de Farias, Dessimoz, Christophe, Aaron Ayllon Benitez, Chen, Yang, Long, Jiao, Ana-Claudia Sima

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Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools von Bastian, Frederic B, Cammarata, Alessandro Brandulas, Carsanaro, Sara, Detering, Harald, Huang, Wan-Ting, Joye, Sagane, Niknejad, Anne, Nyamari, Marion, Mendes de Farias, Tarcisio, Moretti, Sébastien, Tzivanopoulou, Marianna, Wollbrett, Julien, Robinson-Rechavi, Marc

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