A new approach to Health Benefits Package design: an application of the Thanzi La Onse model in Malawi von Molaro, Margherita, Mohan, Sakshi, She, Bingling, Chalkley, Martin, Colbourn, Tim, Collins, Joseph H, Connolly, Emilia, Graham, Matthew M, Janoušková, Eva, Li Lin, Ines, Manthalu, Gerald, Mnjowe, Emmanuel, Nkhoma, Dominic, Twea, Pakwanja D, Phillips, Andrew N, Revill, Paul, Tamuri, Asif U, Mfutso-Bengo, Joseph, Mangal, Tara D, Hallett, Timothy B

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A phylogenetic approach for weighting genetic sequences von De Maio, Nicola, Alekseyenko, Alexander V., Coleman-Smith, William J., Pardi, Fabio, Suchard, Marc A., Tamuri, Asif U., Truszkowski, Jakub, Goldman, Nick

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Health workforce needs in Malawi: analysis of the Thanzi La Onse integrated epidemiological model of care von She, Bingling, Mangal, Tara D, Prust, Margaret L, Heung, Stephanie, Chalkley, Martin, Colbourn, Tim, Collins, Joseph H, Graham, Matthew M, Jewell, Britta, Joshi, Purava, Li Lin, Ines, Mnjowe, Emmanuel, Mohan, Sakshi, Molaro, Margherita, Phillips, Andrew N, Revill, Paul, Smith, Robert Manning, Tamuri, Asif U, Twea, Pakwanja D, Manthalu, Gerald, Mfutso-Bengo, Joseph, Hallett, Timothy B

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A species-level timeline of mammal evolution integrating phylogenomic data von Álvarez-Carretero, Sandra, Tamuri, Asif U., Battini, Matteo, Nascimento, Fabrícia F., Carlisle, Emily, Asher, Robert J., Yang, Ziheng, Donoghue, Philip C. J., dos Reis, Mario

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Alignment Modulates Ancestral Sequence Reconstruction Accuracy von Vialle, Ricardo Assunção, Tamuri, Asif U, Goldman, Nick

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A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection von Tamuri, Asif U, dos Reis, Mario

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Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination von Cudini, Juliana, Roy, Sunando, Houldcroft, Charlotte J., Bryant, Josephine M., Depledge, Daniel P., Tutill, Helena, Veys, Paul, Williams, Rachel, Worth, Austen J. J., Tamuri, Asif U., Goldstein, Richard A., Breuer, Judith

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Genome sequencing of normal cells reveals developmental lineages and mutational processes von Behjati, Sam, Huch, Meritxell, van Boxtel, Ruben, Karthaus, Wouter, Wedge, David C., Tamuri, Asif U., Martincorena, Iñigo, Petljak, Mia, Alexandrov, Ludmil B., Gundem, Gunes, Tarpey, Patrick S., Roerink, Sophie, Blokker, Joyce, Maddison, Mark, Mudie, Laura, Robinson, Ben, Nik-Zainal, Serena, Campbell, Peter, Goldman, Nick, van de Wetering, Marc, Cuppen, Edwin, Clevers, Hans, Stratton, Michael R.

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Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models von Tamuri, Asif U, dos Reis, Mario, Goldstein, Richard A

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Rapid morphological evolution in placental mammals post-dates the origin of the crown group von Halliday, Thomas J D, Dos Reis, Mario, Tamuri, Asif U, Ferguson-Gow, Henry, Yang, Ziheng, Goswami, Anjali

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A penalized-likelihood method to estimate the distribution of selection coefficients from phylogenetic data von Tamuri, Asif U, Goldman, Nick, dos Reis, Mario

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chaste codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians von Hendrix, Maurice, Clerx, Michael, Tamuri, Asif U, Keating, Sarah M, Johnstone, Ross H, Cooper, Jonathan, Mirams, Gary R

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Identifying changes in selective constraints: host shifts in influenza von Tamuri, Asif U, Dos Reis, Mario, Hay, Alan J, Goldstein, Richard A

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Estimates of resource use in the public-sector health-care system and the effect of strengthening health-care services in Malawi during 2015–19: a modelling study (Thanzi La Onse)... von Hallett, Timothy B, Mangal, Tara D, Tamuri, Asif U, Arinaminpathy, Nimalan, Cambiano, Valentina, Chalkley, Martin, Collins, Joseph H, Cooper, Jonathan, Gillman, Matthew S, Giordano, Mosè, Graham, Matthew M, Graham, William, Hawryluk, Iwona, Janoušková, Eva, Jewell, Britta L, Lin, Ines Li, Manning Smith, Robert, Manthalu, Gerald, Mnjowe, Emmanuel, Mohan, Sakshi, Molaro, Margherita, Ng'ambi, Wingston, Nkhoma, Dominic, Piatek, Stefan, Revill, Paul, Rodger, Alison, Salmanidou, Dimitra, She, Bingling, Smit, Mikaela, Twea, Pakwanja D, Colbourn, Tim, Mfutso-Bengo, Joseph, Phillips, Andrew N

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Factors associated with medical consumable availability in level 1 facilities in Malawi: a secondary analysis of a facility census von Mohan, Sakshi, Mangal, Tara D, Colbourn, Tim, Chalkley, Martin, Chimwaza, Chikhulupiliro, Collins, Joseph H, Graham, Matthew M, Janoušková, Eva, Jewell, Britta, Kadewere, Godfrey, Li Lin, Ines, Manthalu, Gerald, Mfutso-Bengo, Joseph, Mnjowe, Emmanuel, Molaro, Margherita, Nkhoma, Dominic, Revill, Paul, She, Bingling, Manning Smith, Robert, Tafesse, Wiktoria, Tamuri, Asif U, Twea, Pakwanja, Phillips, Andrew N, Hallett, Timothy B

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Haplotype assignment of longitudinal viral deep sequencing data using covariation of variant frequencies von Venturini, Cristina, Pang, Juanita, Tamuri, Asif U, Roy, Sunando, Atkinson, Claire, Griffiths, Paul, Breuer, Judith, Goldstein, Richard A

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ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments von Schwarz, Roland F, Tamuri, Asif U, Kultys, Marek, King, James, Godwin, James, Florescu, Ana M, Schultz, Jörg, Goldman, Nick

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ArchSchema: a tool for interactive graphing of related Pfam domain architectures von Tamuri, Asif U., Laskowski, Roman A.

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Charting the Host Adaptation of Influenza Viruses von dos Reis, Mario, Tamuri, Asif U., Hay, Alan J., Goldstein, Richard A.

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cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians von Hendrix, Maurice, Clerx, Michael, Tamuri, Asif U, Keating, Sarah M, Johnstone, Ross H, Cooper, Jonathan, Mirams, Gary R

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