A robust SNP barcode for typing Mycobacterium tuberculosis complex strains von Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.

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Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains von Spadar, Anton, Perdigão, João, Campino, Susana, Clark, Taane G

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Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice von Lawley, Trevor D, Clare, Simon, Walker, Alan W, Stares, Mark D, Connor, Thomas R, Raisen, Claire, Goulding, David, Rad, Roland, Schreiber, Fernanda, Brandt, Cordelia, Deakin, Laura J, Pickard, Derek J, Duncan, Sylvia H, Flint, Harry J, Clark, Taane G, Parkhill, Julian, Dougan, Gordon

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JC Polyomavirus T-antigen protein expression and the risk of colorectal cancer: Systematic review and meta-analysis of case-control studies von Kimla, Lenka J, Clark, Taane G, Banerjee, Sri, Campino, Susana

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Differences in the frequency of genetic variants associated with iron imbalance among global populations von Jallow, Momodou W., Cerami, Carla, Clark, Taane G., Prentice, Andrew M., Campino, Susana

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Genetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid von Gómez-González, Paula J., Perdigao, Joao, Gomes, Pedro, Puyen, Zully M., Santos-Lazaro, David, Napier, Gary, Hibberd, Martin L., Viveiros, Miguel, Portugal, Isabel, Campino, Susana, Phelan, Jody E., Clark, Taane G.

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Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi von Glynn, Judith R, Guerra-Assunção, José Afonso, Houben, Rein M G J, Sichali, Lifted, Mzembe, Themba, Mwaungulu, Lorrain K, Mwaungulu, J Nimrod, McNerney, Ruth, Khan, Palwasha, Parkhill, Julian, Crampin, Amelia C, Clark, Taane G

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Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis von Coll, Francesc, Phelan, Jody, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ali, Shahjahan, Abdallah, Abdallah M., Alghamdi, Saad, Alsomali, Mona, Ahmed, Abdallah O., Portelli, Stephanie, Oppong, Yaa, Alves, Adriana, Bessa, Theolis Barbosa, Campino, Susana, Caws, Maxine, Chatterjee, Anirvan, Crampin, Amelia C., Dheda, Keertan, Furnham, Nicholas, Glynn, Judith R., Grandjean, Louis, Minh Ha, Dang, Hasan, Rumina, Hasan, Zahra, Hibberd, Martin L., Joloba, Moses, Jones-López, Edward C., Matsumoto, Tomoshige, Miranda, Anabela, Moore, David J., Mocillo, Nora, Panaiotov, Stefan, Parkhill, Julian, Penha, Carlos, Perdigão, João, Portugal, Isabel, Rchiad, Zineb, Robledo, Jaime, Sheen, Patricia, Shesha, Nashwa Talaat, Sirgel, Frik A., Sola, Christophe, Oliveira Sousa, Erivelton, Streicher, Elizabeth M., Helden, Paul Van, Viveiros, Miguel, Warren, Robert M., McNerney, Ruth, Pain, Arnab, Clark, Taane G.

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Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs von Phelan, Jody E, O'Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa E A, Campino, Susana, O'Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G

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Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil von Campos, Monica C, Dombrowski, Jamille G, Phelan, Jody, Marinho, Claudio R F, Hibberd, Martin, Clark, Taane G, Campino, Susana

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Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia von Takala-Harrison, Shannon, Jacob, Christopher G., Arze, Cesar, Cummings, Michael P., Silva, Joana C., Dondorp, Arjen M., Fukuda, Mark M., Hien, Tran Tinh, Mayxay, Mayfong, Noedl, Harald, Nosten, Francois, Kyaw, Myat P., Nhien, Nguyen Thanh Thuy, Imwong, Mallika, Bethell, Delia, Se, Youry, Lon, Chanthap, Tyner, Stuart D., Saunders, David L., Ariey, Frederic, Mercereau-Puijalon, Odile, Menard, Didier, Newton, Paul N., Khanthavong, Maniphone, Hongvanthong, Bouasy, Starzengruber, Peter, Fuehrer, Hans-Peter, Swoboda, Paul, Khan, Wasif A., Phyo, Aung Pyae, Nyunt, Myaing M., Nyunt, Myat H., Brown, Tyler S., Adams, Matthew, Pepin, Christopher S., Bailey, Jason, Tan, John C., Ferdig, Michael T., Clark, Taane G., Miotto, Olivo, MacInnis, Bronwyn, Kwiatkowski, Dominic P., White, Nicholas J., Ringwald, Pascal, Plowe, Christopher V.

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A transcriptional switch underlies commitment to sexual development in malaria parasites von Kafsack, Björn F. C., Rovira-Graells, Núria, Clark, Taane G., Bancells, Cristina, Crowley, Valerie M., Campino, Susana G., Williams, April E., Drought, Laura G., Kwiatkowski, Dominic P., Baker, David A., Cortés, Alfred, Llinás, Manuel

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Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan von Ali, Asho, Hasan, Zahra, McNerney, Ruth, Mallard, Kim, Hill-Cawthorne, Grant, Coll, Francesc, Nair, Mridul, Pain, Arnab, Clark, Taane G, Hasan, Rumina

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Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains von Spadar, Anton, Perdigão, João, Campino, Susana, Clark, Taane G.

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Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies von Napier, Gary, Campino, Susana, Merid, Yared, Abebe, Markos, Woldeamanuel, Yimtubezinash, Aseffa, Abraham, Hibberd, Martin L., Phelan, Jody, Clark, Taane G.

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Genetic diversity of the Plasmodium falciparum GTP-cyclohydrolase 1, dihydrofolate reductase and dihydropteroate synthetase genes reveals new insights into sulfadoxine-pyrimethamin... von Turkiewicz, Anna, Manko, Emilia, Sutherland, Colin J., Benavente, Ernest Diez, Campino, Susana, Clark, Taane G.

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Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania von Ravenhall, Matt, Campino, Susana, Sepúlveda, Nuno, Manjurano, Alphaxard, Nadjm, Behzad, Mtove, George, Wangai, Hannah, Maxwell, Caroline, Olomi, Raimos, Reyburn, Hugh, Drakeley, Christopher J, Riley, Eleanor M, Clark, Taane G

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Large-scale genomic analysis of Mycobacterium tuberculosis reveals extent of target and compensatory mutations linked to multi-drug resistant tuberculosis von Napier, Gary, Campino, Susana, Phelan, Jody E., Clark, Taane G.

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The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis von Dheda, Keertan, Prof, Gumbo, Tawanda, Prof, Maartens, Gary, Prof, Dooley, Kelly E, PhD, McNerney, Ruth, PhD, Murray, Megan, Prof, Furin, Jennifer, PhD, Nardell, Edward A, Prof, London, Leslie, Prof, Lessem, Erica, MPH, Theron, Grant, PhD, van Helden, Paul, Prof, Niemann, Stefan, Prof, Merker, Matthias, Dr rer nat, Dowdy, David, PhD, Van Rie, Annelies, Prof, Siu, Gilman K H, PhD, Pasipanodya, Jotam G, PhD, Rodrigues, Camilla, MD, Clark, Taane G, Prof, Sirgel, Frik A, PhD, Esmail, Aliasgar, MBBS, Lin, Hsien-Ho, ScD, Atre, Sachin R, PhD, Schaaf, H Simon, Prof, Chang, Kwok Chiu, MBBS, Lange, Christoph, Prof, Nahid, Payam, Prof, Udwadia, Zarir F, MD, Horsburgh, C Robert, Prof, Churchyard, Gavin J, PhD, Menzies, Dick, Prof, Hesseling, Anneke C, Prof, Nuermberger, Eric, Prof, McIlleron, Helen, Prof, Fennelly, Kevin P, MD, Goemaere, Eric, PhD, Jaramillo, Ernesto, PhD, Low, Marcus, MA, Jara, Carolina Morán, RN, Padayatchi, Nesri, PhD, Warren, Robin M, Prof

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A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria von Diez Benavente, Ernest, Campos, Monica, Phelan, Jody, Nolder, Debbie, Dombrowski, Jamille G., Marinho, Claudio R. F., Sriprawat, Kanlaya, Taylor, Aimee R., Watson, James, Roper, Cally, Nosten, Francois, Sutherland, Colin J., Campino, Susana, Clark, Taane G.

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