Ribosomal Database Project: improved alignments and new tools for rRNA analysis von Cole, J.R, Wang, Q, Cardenas, E, Fish, J, Chai, B, Farris, R.J, Kulam-Syed-Mohideen, A.S, McGarrell, D.M, Marsh, T, Garrity, G.M, Tiedje, J.M

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The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data von Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Bandela, A. M., Cardenas, E., Garrity, G. M., Tiedje, J. M.

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Coselection of Cadmium and Benzalkonium Chloride Resistance in Conjugative Transfers from Nonpathogenic Listeria spp. to Other Listeriae von KATHARIOS-LANWERMEYER, S, RAKIC-MARTINEZ, M, ELHANAFI, D, RATANI, S, TIEDJE, J. M, KATHARIOU, S

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Global Transcriptome Analysis of Shewanella oneidensis MR-1 Exposed to Different Terminal Electron Acceptors von BELIAEV, A. S, KLINGEMAN, D. M, KLAPPENBACH, J. A, WU, L, ROMINE, M. F, TIEDJE, J. M, NEALSON, K. H, FREDRICKSON, J. K, ZHOU, J

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The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis von Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam, S. A., McGarrell, D. M., Garrity, G. M., Tiedje, J. M.

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Simultaneous Recovery of RNA and DNA from Soils and Sediments von HURT, Richard A, XIAOYUN QIU, LIYOU WU, ROH, Yul, PALUMBO, A. V, TIEDJE, J. M, JIZHONG ZHOU

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DNA recovery from soils of diverse composition von Zhou, J. (Michigan State University, East Lansing, MI.), Bruns, M.A, Tiedje, J.M

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A new version of the RDP (Ribosomal Database Project) von Maidak, Bonnie L., Cole, James R., Parker, Charles T., Garrity, George M., Larsen, Niels, Li, Bing, Lilburn, Timothy G., McCaughey, Michael J., Olsen, Gary J., Overbeek, Ross, Pramanik, Sakti, Schmidt, Thomas M., Tiedje, James M., Woese, Carl R.

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Bioreactive Barriers:  A Comparison of Bioaugmentation and Biostimulation for Chlorinated Solvent Remediation von Lendvay, J. M., Löffler, F. E., Dollhopf, M., Aiello, M. R., Daniels, G., Fathepure, B. Z., Gebhard, M., Heine, R., Helton, R., Shi, J., Krajmalnik-Brown, R., Major, C. L., Barcelona, M. J., Petrovskis, E., Hickey, R., Tiedje, J. M., Adriaens, P.

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The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy von Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, Q., Kulam, S. A., Chandra, S., McGarrell, D. M., Schmidt, T. M., Garrity, G. M., Tiedje, J. M.

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Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil von CHO, Jae-Chang, TIEDJE, James M

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Genetic and Genomic Insights into the Role of Benzoate-Catabolic Pathway Redundancy in Burkholderia xenovorans LB400 von DENEF, V. J, KLAPPENBACH, J. A, PATRAUCHAN, M. A, FLORIZONE, C, RODRIGUES, J. L. M, TSOI, T. V, VERSTRAETE, W, ELTIS, L. D, TIEDJE, J. M

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Genetically engineered organisms and the environment: current status and recommendations von Snow, A.A, Andow, D.A, Gepts, P, Hallerman, E.M, Power, A, Tiedje, J.M, Wolfenbarger, L.L

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Spatial and Resource Factors Influencing High Microbial Diversity in Soil von Zhou, Jizhong, Xia, Beicheng, Treves, David S, Wu, L-Y, Marsh, Terry L, O'Neill, Robert V, Palumbo, Anthony V, Tiedje, James M

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Nitrite Reductase Genes (nirK andnirS) as Functional Markers To Investigate Diversity of Denitrifying Bacteria in Pacific Northwest Marine Sediment Communities von Braker, G, Zhou, J, Wu, L, Devol, A H, Tiedje, J M

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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs von Pell, Jason, Hintze, Arend, Canino-Koning, Rosangela, Howe, Adina, Tiedje, James M, Brown, C. Titus

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A Two-Species Test of the Hypothesis That Spatial Isolation Influences Microbial Diversity in Soil von D. S. Treves, B. Xia, Zhou, J., Tiedje, J. M.

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Biphenyl and Benzoate Metabolism in a Genomic Context: Outlining Genome-Wide Metabolic Networks in Burkholderia xenovorans LB400 von DENEF, V. J, PARK, J, TSOI, T. V, ROUILLARD, J.-M, ZHANG, H, WIBBENMEYER, J. A, VERSTRAETE, W, GULARI, E, HASHSHAM, S. A, TIEDJE, J. M

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Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices von Williams, M. R, Stedtfeld, R. D, Waseem, H, Stedtfeld, T, Upham, B, Khalife, W, Etchebarne, B, Hughes, M, Tiedje, J. M, Hashsham, S. A

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Evaluation of PCR-Generated Chimeras, Mutations, and Heteroduplexes with 16S rRNA Gene-Based Cloning von Qiu, X, Wu, L, Huang, H, McDonel, P E, Palumbo, A V, Tiedje, J M, Zhou, J

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