PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important Phenotypes von Ali, Ali, Thorgaard, Gary H., Salem, Mohamed

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Increased mitochondrial DNA diversity in ancient Columbia River basin Chinook salmon Oncorhynchus tshawytscha von Johnson, Bobbi M, Kemp, Brian M, Thorgaard, Gary H

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Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout von Salem, Mohamed, Paneru, Bam, Al-Tobasei, Rafet, Abdouni, Fatima, Thorgaard, Gary H, Rexroad, Caird E, Yao, Jianbo

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Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches von Salem, Mohamed, Rexroad, 3rd, Caird E, Wang, Jiannan, Thorgaard, Gary H, Yao, Jianbo

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A conserved haplotype controls parallel adaptation in geographically distant salmonid populations von MILLER, MICHAEL R., BRUNELLI, JOSEPH P., WHEELER, PAUL A., LIU, SIXIN, REXROAD III, CAIRD E., PALTI, YNIV, DOE, CHRIS Q., THORGAARD, GARY H.

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Sex-dependent dominance maintains migration supergene in rainbow trout von Pearse, Devon E., Barson, Nicola J., Nome, Torfinn, Gao, Guangtu, Campbell, Matthew A., Abadía-Cardoso, Alicia, Anderson, Eric C., Rundio, David E., Williams, Thomas H., Naish, Kerry A., Moen, Thomas, Liu, Sixin, Kent, Matthew, Moser, Michel, Minkley, David R., Rondeau, Eric B., Brieuc, Marine S. O., Sandve, Simen Rød, Miller, Michael R., Cedillo, Lucydalila, Baruch, Kobi, Hernandez, Alvaro G., Ben-Zvi, Gil, Shem-Tov, Doron, Barad, Omer, Kuzishchin, Kirill, Garza, John Carlos, Lindley, Steven T., Koop, Ben F., Thorgaard, Gary H., Palti, Yniv, Lien, Sigbjørn

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The Genetic Basis of Smoltification-Related Traits in Oncorhynchus mykiss von Nichols, Krista M, Edo, Alicia Felip, Wheeler, Paul A, Thorgaard, Gary H

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A New Single Nucleotide Polymorphism Database for Rainbow Trout Generated Through Whole Genome Resequencing von Gao, Guangtu, Nome, Torfinn, Pearse, Devon E, Moen, Thomas, Naish, Kerry A, Thorgaard, Gary H, Lien, Sigbjørn, Palti, Yniv

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Identification of High-Confidence Structural Variants in Domesticated Rainbow Trout Using Whole-Genome Sequencing von Liu, Sixin, Gao, Guangtu, Layer, Ryan M, Thorgaard, Gary H, Wiens, Gregory D, Leeds, Timothy D, Martin, Kyle E, Palti, Yniv

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Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads von Hale, Matthew C, Xu, Peng, Scardina, Julie, Wheeler, Paul A, Thorgaard, Gary H, Nichols, Krista M

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Y-specific sequences and polymorphisms in rainbow trout and Chinook salmon von Brunelli, Joseph P, Wertzler, Kelsey J, Sundin, Kyle, Thorgaard, Gary H

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Aggressive Behavior, Brain Size and Domestication in Clonal Rainbow Trout Lines von Campbell, Janet M., Carter, Patrick A., Wheeler, Paul A., Thorgaard, Gary H.

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Characterization of the interferon genes in homozygous rainbow trout reveals two novel genes, alternate splicing and differential regulation of duplicated genes von Purcell, Maureen K., Laing, Kerry J., Woodson, James C., Thorgaard, Gary H., Hansen, John D.

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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates von Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Louis, Alexandra, Dehais, Patrice, Bardou, Philippe, Montfort, Jérôme, Klopp, Christophe, Cabau, Cédric, Gaspin, Christine, Thorgaard, Gary H., Boussaha, Mekki, Quillet, Edwige, Guyomard, René, Galiana, Delphine, Bobe, Julien, Volff, Jean-Nicolas, Genêt, Carine, Wincker, Patrick, Jaillon, Olivier, Crollius, Hugues Roest, Guiguen, Yann

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Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus von Purcell, Maureen K., Nichols, Krista M., Winton, James R., Kurath, Gael, Thorgaard, Gary H., Wheeler, Paul, Hansen, John D., Herwig, Russell P., Park, Linda K.

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An AFLP-based approach for the identification of sex-linked markers in rainbow trout ( Oncorhynchus mykiss) von Felip, Alicia, Young, William P., Wheeler, Paul A., Thorgaard, Gary H.

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Migration‐related phenotypic divergence is associated with epigenetic modifications in rainbow trout von Baerwald, Melinda R., Meek, Mariah H., Stephens, Molly R., Nagarajan, Raman P., Goodbla, Alisha M., Tomalty, Katharine M. H., Thorgaard, Gary H., May, Bernie, Nichols, Krista M.

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A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout von Gao, Guangtu, Magadan, Susana, Waldbieser, Geoffrey C, Youngblood, Ramey C, Wheeler, Paul A, Scheffler, Brian E, Thorgaard, Gary H, Palti, Yniv

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A first generation BAC-based physical map of the rainbow trout genome von Palti, Yniv, Luo, Ming-Cheng, Hu, Yuqin, Genet, Carine, You, Frank M, Vallejo, Roger L, Thorgaard, Gary H, Wheeler, Paul A, Rexroad, 3rd, Caird E

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Analysis of host genetic diversity and viral entry as sources of between-host variation in viral load von Wargo, Andrew R., Kell, Alison M., Scott, Robert J., Thorgaard, Gary H., Kurath, Gael

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