Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics von Purcell, Anthony W., Ramarathinam, Sri H., Ternette, Nicola

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Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers von Saini, Sunil Kumar, Ørskov, Andreas Due, Bjerregaard, Anne-Mette, Unnikrishnan, Ashwin, Holmberg-Thydén, Staffan, Borch, Annie, Jensen, Kathrine Valentini, Anande, Govardhan, Bentzen, Amalie Kai, Marquard, Andrea Marion, Tamhane, Tripti, Treppendahl, Marianne Bach, Gang, Anne Ortved, Dufva, Inge Høgh, Szallasi, Zoltan, Ternette, Nicola, Pedersen, Anders Gorm, Eklund, Aron Charles, Pimanda, John, Grønbæk, Kirsten, Hadrup, Sine Reker

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Long non-coding RNA-derived peptides are immunogenic and drive a potent anti-tumour response von Barczak, Wojciech, Carr, Simon M., Liu, Geng, Munro, Shonagh, Nicastri, Annalisa, Lee, Lian Ni, Hutchings, Claire, Ternette, Nicola, Klenerman, Paul, Kanapin, Alexander, Samsonova, Anastasia, La Thangue, Nicholas B.

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LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly von Attig, Jan, Young, George R, Hosie, Louise, Perkins, David, Encheva-Yokoya, Vesela, Stoye, Jonathan P, Snijders, Ambrosius P, Ternette, Nicola, Kassiotis, George

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Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding von Chappell, Paul, Meziane, El Kahina, Harrison, Michael, Magiera, Łukasz, Hermann, Clemens, Mears, Laura, Wrobel, Antony G, Durant, Charlotte, Nielsen, Lise Lotte, Buus, Søren, Ternette, Nicola, Mwangi, William, Butter, Colin, Nair, Venugopal, Ahyee, Trudy, Duggleby, Richard, Madrigal, Alejandro, Roversi, Pietro, Lea, Susan M, Kaufman, Jim

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Elucidation of the Signatures of Proteasome-Catalyzed Peptide Splicing von Paes, Wayne, Leonov, German, Partridge, Thomas, Nicastri, Annalisa, Ternette, Nicola, Borrow, Persephone

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An open-source computational and data resource to analyze digital maps of immunopeptidomes von Caron, Etienne, Espona, Lucia, Kowalewski, Daniel J, Schuster, Heiko, Ternette, Nicola, Alpízar, Adán, Schittenhelm, Ralf B, Ramarathinam, Sri H, Lindestam Arlehamn, Cecilia S, Chiek Koh, Ching, Gillet, Ludovic C, Rabsteyn, Armin, Navarro, Pedro, Kim, Sangtae, Lam, Henry, Sturm, Theo, Marcilla, Miguel, Sette, Alessandro, Campbell, David S, Deutsch, Eric W, Moritz, Robert L, Purcell, Anthony W, Rammensee, Hans-Georg, Stevanovic, Stefan, Aebersold, Ruedi

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A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue von Hakimi, Osnat, Ternette, Nicola, Murphy, Richard, Kessler, Benedikt M, Carr, Andrew

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MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer von Liao, Hanqing, Barra, Carolina, Zhou, Zhicheng, Peng, Xu, Woodhouse, Isaac, Tailor, Arun, Parker, Robert, Carré, Alexia, Borrow, Persephone, Hogan, Michael J., Paes, Wayne, Eisenlohr, Laurence C., Mallone, Roberto, Nielsen, Morten, Ternette, Nicola

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Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C12:02, a Protective Allele, Using an Immunopeptidomics Approach von Chikata, Takayuki, Paes, Wayne, Akahoshi, Tomohiro, Partridge, Thomas, Murakoshi, Hayato, Gatanaga, Hiroyuki, Ternette, Nicola, Oka, Shinichi, Borrow, Persephone, Takiguchi, Masafumi

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Identification of antigens presented by MHC for vaccines against tuberculosis von Bettencourt, Paulo, Müller, Julius, Nicastri, Annalisa, Cantillon, Daire, Madhavan, Meera, Charles, Philip D., Fotso, Carine B., Wittenberg, Rachel, Bull, Naomi, Pinpathomrat, Nawamin, Waddell, Simon J., Stylianou, Elena, Hill, Adrian V. S., Ternette, Nicola, McShane, Helen

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The physiological interactome of TCR-like antibody therapeutics in human tissues von Marrer-Berger, Estelle, Nicastri, Annalisa, Augustin, Angelique, Kramar, Vesna, Liao, Hanqing, Hanisch, Lydia Jasmin, Carpy, Alejandro, Weinzierl, Tina, Durr, Evelyne, Schaub, Nathalie, Nudischer, Ramona, Ortiz-Franyuti, Daniela, Breous-Nystrom, Ekaterina, Stucki, Janick, Hobi, Nina, Raggi, Giulia, Cabon, Lauriane, Lezan, Emmanuelle, Umaña, Pablo, Woodhouse, Isaac, Bujotzek, Alexander, Klein, Christian, Ternette, Nicola

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Critical Role of Endoplasmic Reticulum Aminopeptidase 1 in Determining the Length and Sequence of Peptides Bound and Presented by HLA–B27 von Chen, Liye, Fischer, Roman, Peng, Yanchun, Reeves, Emma, McHugh, Kirsty, Ternette, Nicola, Hanke, Tomas, Dong, Tao, Elliott, Tim, Shastri, Nilabh, Kollnberger, Simon, James, Edward, Kessler, Benedikt, Bowness, Paul

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Aberrant succination of proteins in fumarate hydratase-deficient mice and HLRCC patients is a robust biomarker of mutation status von Bardella, Chiara, El-Bahrawy, Mona, Frizzell, Norma, Adam, Julie, Ternette, Nicola, Hatipoglu, Emine, Howarth, Kimberley, O'Flaherty, Linda, Roberts, Ian, Turner, Gareth, Taylor, Jennifer, Giaslakiotis, Konstantinos, Macaulay, Valentine M, Harris, Adrian L, Chandra, Ashish, Lehtonen, Heli J, Launonen, Virpi, Aaltonen, Lauri A, Pugh, Christopher W, Mihai, Radu, Trudgian, David, Kessler, Benedikt, Baynes, John W, Ratcliffe, Peter J, Tomlinson, Ian P, Pollard, Patrick J

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Interferon-α promotes HLA-B-restricted presentation of conventional and alternative antigens in human pancreatic β-cells von Carré, Alexia, Samassa, Fatoumata, Zhou, Zhicheng, Perez-Hernandez, Javier, Lekka, Christiana, Manganaro, Anthony, Oshima, Masaya, Liao, Hanqing, Parker, Robert, Nicastri, Annalisa, Brandao, Barbara, Colli, Maikel L., Eizirik, Decio L., Aluri, Jahnavi, Patel, Deep, Göransson, Marcus, Burgos Morales, Orlando, Anderson, Amanda, Landry, Laurie, Kobaisi, Farah, Scharfmann, Raphael, Marselli, Lorella, Marchetti, Piero, You, Sylvaine, Nakayama, Maki, Hadrup, Sine R., Kent, Sally C., Richardson, Sarah J., Ternette, Nicola, Mallone, Roberto

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HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes von Karnaukhov, Vadim, Paes, Wayne, Woodhouse, Isaac B, Partridge, Thomas, Nicastri, Annalisa, Brackenridge, Simon, Shcherbinin, Dmitrii, Chudakov, Dmitry M, Zvyagin, Ivan V, Ternette, Nicola, Koohy, Hashem, Borrow, Persephone, Shugay, Mikhail

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Corrigendum: Elucidation of the Signatures of Proteasome-Catalysed Peptide Splicing von Paes, Wayne, Leonov, German, Partridge, Thomas, Nicastri, Annalisa, Ternette, Nicola, Borrow, Persephone

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Characterization of the Theileria parva sporozoite proteome von Nyagwange, James, Tijhaar, Edwin, Ternette, Nicola, Mobegi, Fredrick, Tretina, Kyle, Silva, Joana C., Pelle, Roger, Nene, Vishvanath

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Targeting Mutated Plus Germline Epitopes Confers Pre-clinical Efficacy of an Instantly Formulated Cancer Nano-Vaccine von Mohsen, Mona O, Vogel, Monique, Riether, Carsten, Muller, Julius, Salatino, Silvia, Ternette, Nicola, Gomes, Ariane C, Cabral-Miranda, Gustavo, El-Turabi, Aadil, Ruedl, Christiane, Kundig, Thomas M, Dermime, Said, Knuth, Alexander, Speiser, Daniel E, Bachmann, Martin F

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Discrimination Between Human Leukocyte Antigen Class I-Bound and Co-Purified HIV-Derived Peptides in Immunopeptidomics Workflows von Partridge, Thomas, Nicastri, Annalisa, Kliszczak, Anna E, Yindom, Louis-Marie, Kessler, Benedikt M, Ternette, Nicola, Borrow, Persephone

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