Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds von Saatchi, Mahdi, Schnabel, Robert D, Taylor, Jeremy F, Garrick, Dorian J

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Development and Characterization of a High Density SNP Genotyping Assay for Cattle von Matukumalli, Lakshmi K, Lawley, Cynthia T, Schnabel, Robert D, Taylor, Jeremy F, Allan, Mark F, Heaton, Michael P, O'Connell, Jeff, Moore, Stephen S, Smith, Timothy P.L, Sonstegard, Tad S, Van Tassell, Curtis P

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Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs von Marsden, Clare D., Vecchyo, Diego Ortega-Del, O’Brien, Dennis P., Taylor, Jeremy F., Ramirez, Oscar, Vilà, Carles, Marques-Bonet, Tomas, Schnabel, Robert D., Wayne, Robert K., Lohmueller, Kirk E.

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Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle von Decker, Jared E, McKay, Stephanie D, Rolf, Megan M, Kim, Jaewoo, Molina Alcalá, Antonio, Sonstegard, Tad S, Hanotte, Olivier, Götherström, Anders, Seabury, Christopher M, Praharani, Lisa, Babar, Masroor Ellahi, Correia de Almeida Regitano, Luciana, Yildiz, Mehmet Ali, Heaton, Michael P, Liu, Wan-Sheng, Lei, Chu-Zhao, Reecy, James M, Saif-Ur-Rehman, Muhammad, Schnabel, Robert D, Taylor, Jeremy F

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Deregressing estimated breeding values and weighting information for genomic regression analyses von Garrick, Dorian J, Taylor, Jeremy F, Fernando, Rohan L

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New World cattle show ancestry from multiple independent domestication events von McTavish, Emily Jane, Decker, Jared E, Schnabel, Robert D, Taylor, Jeremy F, Hillis, David M

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Copy number variation of individual cattle genomes using next-generation sequencing von Bickhart, Derek M, Hou, Yali, Schroeder, Steven G, Alkan, Can, Cardone, Maria Francesca, Matukumalli, Lakshmi K, Song, Jiuzhou, Schnabel, Robert D, Ventura, Mario, Taylor, Jeremy F, Garcia, Jose Fernando, Van Tassell, Curtis P, Sonstegard, Tad S, Eichler, Evan E, Liu, George E

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Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle von Seabury, Christopher M, Oldeschulte, David L, Saatchi, Mahdi, Beever, Jonathan E, Decker, Jared E, Halley, Yvette A, Bhattarai, Eric K, Molaei, Maral, Freetly, Harvey C, Hansen, Stephanie L, Yampara-Iquise, Helen, Johnson, Kristen A, Kerley, Monty S, Kim, JaeWoo, Loy, Daniel D, Marques, Elisa, Neibergs, Holly L, Schnabel, Robert D, Shike, Daniel W, Spangler, Matthew L, Weaber, Robert L, Garrick, Dorian J, Taylor, Jeremy F

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Candidate lethal haplotypes and causal mutations in Angus cattle von Hoff, Jesse L, Decker, Jared E, Schnabel, Robert D, Taylor, Jeremy F

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Messenger RNA biomarkers of Bovine Respiratory Syncytial Virus infection in the whole blood of dairy calves von Johnston, Dayle, Earley, Bernadette, McCabe, Matthew S., Kim, JaeWoo, Taylor, Jeremy F., Lemon, Ken, Duffy, Catherine, McMenamy, Michael, Cosby, S. Louise, Waters, Sinead M.

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Genetic ancestry, admixture, and population structure in rural Dominica von Keith, Monica H, Flinn, Mark V, Durbin, Harly J, Rowan, Troy N, Blomquist, Gregory E, Taylor, Kristen H, Taylor, Jeremy F, Decker, Jared E

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Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications von Wu, Xiao-Lin, Xu, Jiaqi, Feng, Guofei, Wiggans, George R, Taylor, Jeremy F, He, Jun, Qian, Changsong, Qiu, Jiansheng, Simpson, Barry, Walker, Jeremy, Bauck, Stewart

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ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus von Johnston, Dayle, Kim, JaeWoo, Taylor, Jeremy F, Earley, Bernadette, McCabe, Matthew S, Lemon, Ken, Duffy, Catherine, McMenamy, Michael, Cosby, S Louise, Waters, Sinéad M

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Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation von Saatchi, Mahdi, McClure, Mathew C, McKay, Stephanie D, Rolf, Megan M, Kim, JaeWoo, Decker, Jared E, Taxis, Tasia M, Chapple, Richard H, Ramey, Holly R, Northcutt, Sally L, Bauck, Stewart, Woodward, Brent, Dekkers, Jack C M, Fernando, Rohan L, Schnabel, Robert D, Garrick, Dorian J, Taylor, Jeremy F

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A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle von Rowan, Troy N, Hoff, Jesse L, Crum, Tamar E, Taylor, Jeremy F, Schnabel, Robert D, Decker, Jared E

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Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex von Gershwin, Laurel J, Van Eenennaam, Alison L, Anderson, Mark L, McEligot, Heather A, Shao, Matt X, Toaff-Rosenstein, Rachel, Taylor, Jeremy F, Neibergs, Holly L, Womack, James

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Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome von Tizioto, Polyana C, Kim, JaeWoo, Seabury, Christopher M, Schnabel, Robert D, Gershwin, Laurel J, Van Eenennaam, Alison L, Toaff-Rosenstein, Rachel, Neibergs, Holly L, Taylor, Jeremy F

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CRUMBLER: A tool for the prediction of ancestry in cattle von Crum, Tamar E, Schnabel, Robert D, Decker, Jared E, Regitano, Luciana C A, Taylor, Jeremy F

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QTL-mapping and genomic prediction for bovine respiratory disease in U.S. Holsteins using sequence imputation and feature selection von Hoff, Jesse L, Decker, Jared E, Schnabel, Robert D, Seabury, Christopher M, Neibergs, Holly L, Taylor, Jeremy F

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Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation von Maldonado, Mariângela B C, de Rezende Neto, Nelson B, Nagamatsu, Sheila T, Carazzolle, Marcelo F, Hoff, Jesse L, Whitacre, Lynsey K, Schnabel, Robert D, Behura, Susanta K, McKay, Stephanie D, Taylor, Jeremy F, Lopes, Flavia L

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