Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells von Kolle, Gabriel, Shepherd, Jill L, Gardiner, Brooke, Kassahn, Karin S, Cloonan, Nicole, Wood, David L A, Nourbakhsh, Ehsan, Taylor, Darrin F, Wani, Shivangi, Chy, Hun S, Zhou, Qi, McKernan, Kevin, Kuersten, Scott, Laslett, Andrew L, Grimmond, Sean M

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Stem cell transcriptome profiling via massive-scale mRNA sequencing von Cloonan, Nicole, Forrest, Alistair R R, Kolle, Gabriel, Gardiner, Brooke B A, Faulkner, Geoffrey J, Brown, Mellissa K, Taylor, Darrin F, Steptoe, Anita L, Wani, Shivangi, Bethel, Graeme, Robertson, Alan J, Perkins, Andrew C, Bruce, Stephen J, Lee, Clarence C, Ranade, Swati S, Peckham, Heather E, Manning, Jonathan M, McKernan, Kevin J, Grimmond, Sean M

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PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases von Forrest, Alistair R R, Taylor, Darrin F, Fink, J Lynn, Gongora, M Milena, Flegg, Cameron, Teasdale, Rohan D, Suzuki, Harukazu, Kanamori, Mutsumi, Kai, Chikatoshi, Hayashizaki, Yoshihide, Grimmond, Sean M

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RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data von Cloonan, Nicole, Xu, Qinying, Faulkner, Geoffrey J., Taylor, Darrin F., Tang, Dave T. P., Kolle, Gabriel, Grimmond, Sean M.

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Identifying the molecular phenotype of renal progenitor cells von CHALLEN, Grant A, MARTINEZ, Gemma, DAVIS, Melissa J, TAYLOR, Darrin F, CROWE, Mark, TEASDALE, Rohan D, GRIMMOND, Sean M, LITTLE, Melissa H

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Whole–genome characterization of chemoresistant ovarian cancer von Patch, Ann-Marie, Christie, Elizabeth L., Etemadmoghadam, Dariush, Garsed, Dale W., George, Joshy, Fereday, Sian, Nones, Katia, Cowin, Prue, Alsop, Kathryn, Bailey, Peter J., Kassahn, Karin S., Newell, Felicity, Quinn, Michael C. J., Kazakoff, Stephen, Quek, Kelly, Wilhelm-Benartzi, Charlotte, Curry, Ed, Leong, Huei San, Hamilton, Anne, Mileshkin, Linda, Au-Yeung, George, Kennedy, Catherine, Hung, Jillian, Chiew, Yoke-Eng, Harnett, Paul, Friedlander, Michael, Quinn, Michael, Pyman, Jan, Cordner, Stephen, O’Brien, Patricia, Leditschke, Jodie, Young, Greg, Strachan, Kate, Waring, Paul, Azar, Walid, Mitchell, Chris, Traficante, Nadia, Hendley, Joy, Thorne, Heather, Shackleton, Mark, Miller, David K., Arnau, Gisela Mir, Tothill, Richard W., Holloway, Timothy P., Semple, Timothy, Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Idrisoglu, Senel, Bruxner, Timothy J. C., Christ, Angelika N., Poudel, Barsha, Holmes, Oliver, Anderson, Matthew, Leonard, Conrad, Lonie, Andrew, Hall, Nathan, Wood, Scott, Taylor, Darrin F., Xu, Qinying, Fink, J. Lynn, Waddell, Nick, Drapkin, Ronny, Stronach, Euan, Gabra, Hani, Brown, Robert, Jewell, Andrea, Nagaraj, Shivashankar H., Markham, Emma, Wilson, Peter J., Ellul, Jason, McNally, Orla, Doyle, Maria A., Vedururu, Ravikiran, Stewart, Collin, Lengyel, Ernst, Pearson, John V., Waddell, Nicola, deFazio, Anna, Grimmond, Sean M., Bowtell, David D. L.

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Spatial gene expression in the T-stage mouse metanephros von Caruana, Georgina, Cullen-McEwen, Luise, Nelson, Amy L., Kostoulias, Xenia, Woods, Kyra, Gardiner, Brooke, Davis, Melissa J., Taylor, Darrin F., Teasdale, Rohan D., Grimmond, Sean M., Little, Melissa H., Bertram, John F.

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Differential gene expression in the developing mouse ureter von Mitchell, Eleanor K.L., Taylor, Darrin F., Woods, Kyra, Davis, Melissa J., Nelson, Amy L., Teasdale, Rohan D., Grimmond, Sean M., Little, Melissa H., Bertram, John F., Caruana, Georgina

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Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases von Forrest, Alistair R R, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

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Corrigendum: Whole-genome characterization of chemoresistant ovarian cancer von Patch, Ann-Marie, Christie, Elizabeth L, Etemadmoghadam, Dariush, Garsed, Dale W, George, Joshy, Fereday, Sian, Nones, Katia, Cowin, Prue, Alsop, Kathryn, Bailey, Peter J, Kassahn, Karin S, Newell, Felicity, Quinn, Michael C J, Kazakoff, Stephen, Quek, Kelly, Wilhelm-Benartzi, Charlotte, Curry, Ed, Leong, Huei San, Hamilton, Anne, Mileshkin, Linda, Au-Yeung, George, Kennedy, Catherine, Hung, Jillian, Chiew, Yoke-Eng, Harnett, Paul, Friedlander, Michael, Quinn, Michael, Pyman, Jan, Cordner, Stephen, O'Brien, Patricia, Leditschke, Jodie, Young, Greg, Strachan, Kate, Waring, Paul, Azar, Walid, Mitchell, Chris, Traficante, Nadia, Hendley, Joy, Thorne, Heather, Shackleton, Mark, Miller, David K, Arnau, Gisela Mir, Tothill, Richard W, Holloway, Timothy P, Semple, Timothy, Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Idrisoglu, Senel, Bruxner, Timothy J C, Christ, Angelika N, Poudel, Barsha, Holmes, Oliver, Anderson, Matthew, Leonard, Conrad, Lonie, Andrew, Hall, Nathan, Wood, Scott, Taylor, Darrin F, Xu, Qinying, Fink, J Lynn, Waddell, Nick, Drapkin, Ronny, Stronach, Euan, Gabra, Hani, Brown, Robert, Jewell, Andrea, Nagaraj, Shivashankar H, Markham, Emma, Wilson, Peter J, Ellul, Jason, McNally, Orla, Doyle, Maria A, Vedururu, Ravikiran, Stewart, Collin, Lengyel, Ernst, Pearson, John V, Waddell, Nicola, deFazio, Anna, Grimmond, Sean M, Bowtell, David D L

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Correction: Corrigendum: Whole–genome characterization of chemoresistant ovarian cancer von Patch, Ann-Marie, Christie, Elizabeth L., Etemadmoghadam, Dariush, Garsed, Dale W., George, Joshy, Fereday, Sian, Nones, Katia, Cowin, Prue, Alsop, Kathryn, Bailey, Peter J., Kassahn, Karin S., Newell, Felicity, Quinn, Michael C. J., Kazakoff, Stephen, Quek, Kelly, Wilhelm-Benartzi, Charlotte, Curry, Ed, Leong, Huei San, Hamilton, Anne, Mileshkin, Linda, Au-Yeung, George, Kennedy, Catherine, Hung, Jillian, Chiew, Yoke-Eng, Harnett, Paul, Friedlander, Michael, Quinn, Michael, Pyman, Jan, Cordner, Stephen, O’Brien, Patricia, Leditschke, Jodie, Young, Greg, Strachan, Kate, Waring, Paul, Azar, Walid, Mitchell, Chris, Traficante, Nadia, Hendley, Joy, Thorne, Heather, Shackleton, Mark, Miller, David K., Arnau, Gisela Mir, Tothill, Richard W., Holloway, Timothy P., Semple, Timothy, Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Idrisoglu, Senel, Bruxner, Timothy J. C., Christ, Angelika N., Poudel, Barsha, Holmes, Oliver, Anderson, Matthew, Leonard, Conrad, Lonie, Andrew, Hall, Nathan, Wood, Scott, Taylor, Darrin F., Xu, Qinying, Fink, J. Lynn, Waddell, Nick, Drapkin, Ronny, Stronach, Euan, Gabra, Hani, Brown, Robert, Jewell, Andrea, Nagaraj, Shivashankar H., Markham, Emma, Wilson, Peter J., Ellul, Jason, McNally, Orla, Doyle, Maria A., Vedururu, Ravikiran, Stewart, Collin, Lengyel, Ernst, Pearson, John V., Waddell, Nicola, deFazio, Anna, Grimmond, Sean M., Bowtell, David D. L.

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Erratum: Corrigendum: Whole–genome characterization of chemoresistant ovarian cancer von Patch, Ann-Marie, Christie, Elizabeth L., Etemadmoghadam, Dariush, Garsed, Dale W., George, Joshy, Fereday, Sian, Nones, Katia, Cowin, Prue, Alsop, Kathryn, Bailey, Peter J., Kassahn, Karin S., Newell, Felicity, Quinn, Michael C. J., Kazakoff, Stephen, Quek, Kelly, Wilhelm-Benartzi, Charlotte, Curry, Ed, Leong, Huei San, Hamilton, Anne, Mileshkin, Linda, Au-Yeung, George, Kennedy, Catherine, Hung, Jillian, Chiew, Yoke-Eng, Harnett, Paul, Friedlander, Michael, Quinn, Michael, Pyman, Jan, Cordner, Stephen, O’Brien, Patricia, Leditschke, Jodie, Young, Greg, Strachan, Kate, Waring, Paul, Azar, Walid, Mitchell, Chris, Traficante, Nadia, Hendley, Joy, Thorne, Heather, Shackleton, Mark, Miller, David K., Arnau, Gisela Mir, Tothill, Richard W., Holloway, Timothy P., Semple, Timothy, Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Idrisoglu, Senel, Bruxner, Timothy J. C., Christ, Angelika N., Poudel, Barsha, Holmes, Oliver, Anderson, Matthew, Leonard, Conrad, Lonie, Andrew, Hall, Nathan, Wood, Scott, Taylor, Darrin F., Xu, Qinying, Fink, J. Lynn, Waddell, Nick, Drapkin, Ronny, Stronach, Euan, Gabra, Hani, Brown, Robert, Jewell, Andrea, Nagaraj, Shivashankar H., Markham, Emma, Wilson, Peter J., Ellul, Jason, McNally, Orla, Doyle, Maria A., Vedururu, Ravikiran, Stewart, Collin, Lengyel, Ernst, Pearson, John V., Waddell, Nicola, deFazio, Anna, Grimmond, Sean M., Bowtell, David D. L.

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Relationship between transcript isoforms, peptide isoforms, and domain combinations von Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Chikatoshi Kai, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

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Three types of alternative transcription starts identified in this study von Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Chikatoshi Kai, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

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Expression of variant Csf1r transcripts relative to the full-length isoform von Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Chikatoshi Kai, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

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Alternative splice forms of the Csf1 receptor (c-fms) von Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Chikatoshi Kai, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

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Fibromuscular dysplasia: A comprehensive review on evaluation and management and role for multidisciplinary comprehensive care and patient input model von Shah, Kajal P., Peruri, Adithya, Kanneganti, Manasa, Gorsch, Lindsey, Ramcharitar, Randy, Williams, Carlin, Clouse, Darrin, Thomas, Matthew, Norton, Patrick T., Hagspiel, Klaus D., Taylor, Angela, Southerland, Andrew, Matsumoto, Alan H., Angle, John F., Mace, Pamela, Khaja, Minhaj S., Sharma, Aditya M.

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Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes von Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Gingras, Marie-Claude, Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Cowley, Mark J., Gardiner, Brooke B., Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Pajic, Marina, Gill, Anthony J., Pinho, Andreia V., Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Xu, Qinying, Nones, Katia, Lynn Fink, J., Christ, Angelika, Bruxner, Tim, Cloonan, Nicole, Kolle, Gabriel, Newell, Felicity, Pinese, Mark, Humphris, Jeremy L., Kaplan, Warren, Jones, Marc D., Colvin, Emily K., Nagrial, Adnan M., Humphrey, Emily S., Chou, Angela, Chantrill, Lorraine A., Kench, James G., Lovell, Jessica A., Daly, Roger J., Merrett, Neil D., Toon, Christopher, Epari, Krishna, Nguyen, Nam Q., Barbour, Andrew, Zeps, Nikolajs, Kakkar, Nipun, Zhao, Fengmei, Qing Wu, Yuan, Muzny, Donna M., Fisher, William E., Charles Brunicardi, F., Hodges, Sally E., Reid, Jeffrey G., Drummond, Jennifer, Chang, Kyle, Han, Yi, Lewis, Lora R., Dinh, Huyen, Buhay, Christian J., Timms, Lee, Begley, Kimberly, Brown, Andrew, Pai, Deepa, Panchal, Ami, Buchner, Nicholas, Denroche, Robert E., Yung, Christina K., Serra, Stefano, Onetto, Nicole, Mukhopadhyay, Debabrata, Tsao, Ming-Sound, Shaw, Patricia A., Gallinger, Steven, Hruban, Ralph H., Maitra, Anirban, Iacobuzio-Donahue, Christine A., Schulick, Richard D., Morgan, Richard A., Lawlor, Rita T., Scardoni, Maria, Tortora, Giampaolo, Tempero, Margaret A., Mann, Karen M., Jenkins, Nancy A., Perez-Mancera, Pedro A., Adams, David J., Wessels, Lodewyk F. A., Rust, Alistair G., Stein, Lincoln D., Tuveson, David A., Musgrove, Elizabeth A., Hudson, Thomas J., Sutherland, Robert L., Wheeler, David A., Pearson, John V., McPherson, John D., Gibbs, Richard A., Grimmond, Sean M.

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A human phase 1 vaccine clinical trial of the Plasmodium falciparum malaria vaccine candidate apical membrane antigen 1 in Montanide ISA720 adjuvant von Saul, Allan, Lawrence, Greg, Allworth, Anthony, Elliott, Suzanne, Anderson, Karen, Rzepczyk, Christine, Martin, Laura B., Taylor, Darrin, Eisen, Damon P., Irving, David O., Pye, David, Crewther, Pauline E., Hodder, Anthony N., Murphy, Vincent J., Anders, Robin F.

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Redirection of renal mesenchyme to stromal and chondrocytic fates in the presence of TGF-β2 von Sims-Lucas, Sunder, Young, Richard J., Martinez, Gemma, Taylor, Darrin, Grimmond, Sean M., Teasdale, Rohan, Little, Melissa H., Bertram, John F., Caruana, Georgina

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