Molecular signatures database (MSigDB) 3.0 von LIBERZON, Arthur, SUBRAMANIAN, Aravind, PINCHBACK, Reid, THORVALDSDOTTIR, Helga, TAMAYO, Pablo, MESIROV, Jill P

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Illuminating the Onco-GPCRome: Novel G protein–coupled receptor-driven oncocrine networks and targets for cancer immunotherapy von Wu, Victoria, Yeerna, Huwate, Nohata, Nijiro, Chiou, Joshua, Harismendy, Olivier, Raimondi, Francesco, Inoue, Asuka, Russell, Robert B., Tamayo, Pablo, Gutkind, J. Silvio

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GSEA-P: a desktop application for Gene Set Enrichment Analysis von Subramanian, Aravind, Kuehn, Heidi, Gould, Joshua, Tamayo, Pablo, Mesirov, Jill P.

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A Curated Resource for Phosphosite-specific Signature Analysis[S] von Krug, Karsten, Mertins, Philipp, Zhang, Bin, Hornbeck, Peter, Raju, Rajesh, Ahmad, Rushdy, Szucs, Matthew, Mundt, Filip, Forestier, Dominique, Jane-Valbuena, Judit, Keshishian, Hasmik, Gillette, Michael A., Tamayo, Pablo, Mesirov, Jill P., Jaffe, Jacob D., Carr, StevenA, Mani, D.R.

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High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell lines von Yu, Channing, Mannan, Aristotle M, Yvone, Griselda Metta, Ross, Kenneth N, Zhang, Yan-Ling, Marton, Melissa A, Taylor, Bradley R, Crenshaw, Andrew, Gould, Joshua Z, Tamayo, Pablo, Weir, Barbara A, Tsherniak, Aviad, Wong, Bang, Garraway, Levi A, Shamji, Alykhan F, Palmer, Michelle A, Foley, Michael A, Winckler, Wendy, Schreiber, Stuart L, Kung, Andrew L, Golub, Todd R

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Systematic Evaluation of Molecular Networks for Discovery of Disease Genes von Huang, Justin K., Carlin, Daniel E., Yu, Michael Ku, Zhang, Wei, Kreisberg, Jason F., Tamayo, Pablo, Ideker, Trey

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Integrative Genomic Analysis of Medulloblastoma Identifies a Molecular Subgroup That Drives Poor Clinical Outcome von CHO, Yoon-Jae, TSHERNIAK, Aviad, LAU, Ching C, OLSON, James M, GILBERTSON, Richard I, GAJJAR, Amar, DELATTRE, Olivier, KOOL, Marcel, LIGON, Keith, MEYERSON, Matthew, MESIROV, Jill P, POMEROY, Scott L, TAMAYO, Pablo, SANTAGATA, Sandro, LIGON, Azra, GREULICH, Heidi, BERHOUKIM, Rameen, AMANI, Vladimir, GOUMNEROVA, Liliana, EBERHART, Charles G

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Assembly and activation of the Hippo signalome by FAT1 tumor suppressor von Martin, Daniel, Degese, Maria S., Vitale-Cross, Lynn, Iglesias-Bartolome, Ramiro, Valera, Juan Luis Callejas, Wang, Zhiyong, Feng, Xiaodong, Yeerna, Huwate, Vadmal, Vachan, Moroishi, Toshiro, Thorne, Rick F., Zaida, Moraima, Siegele, Bradford, Cheong, Sok C., Molinolo, Alfredo A., Samuels, Yardena, Tamayo, Pablo, Guan, Kun Liang, Lippman, Scott M., Lyons, J. Guy, Gutkind, J. Silvio

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High-throughput Phenotyping of Lung Cancer Somatic Mutations von Berger, Alice H., Brooks, Angela N., Wu, Xiaoyun, Shrestha, Yashaswi, Chouinard, Candace, Piccioni, Federica, Bagul, Mukta, Kamburov, Atanas, Imielinski, Marcin, Hogstrom, Larson, Zhu, Cong, Yang, Xiaoping, Pantel, Sasha, Sakai, Ryo, Watson, Jacqueline, Kaplan, Nathan, Campbell, Joshua D., Singh, Shantanu, Root, David E., Narayan, Rajiv, Natoli, Ted, Lahr, David L., Tirosh, Itay, Tamayo, Pablo, Getz, Gad, Wong, Bang, Doench, John, Subramanian, Aravind, Golub, Todd R., Meyerson, Matthew, Boehm, Jesse S.

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A melanoma cell state distinction influences sensitivity to MAPK pathway inhibitors von Konieczkowski, David J, Johannessen, Cory M, Abudayyeh, Omar, Kim, Jong Wook, Cooper, Zachary A, Piris, Adriano, Frederick, Dennie T, Barzily-Rokni, Michal, Straussman, Ravid, Haq, Rizwan, Fisher, David E, Mesirov, Jill P, Hahn, William C, Flaherty, Keith T, Wargo, Jennifer A, Tamayo, Pablo, Garraway, Levi A

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HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers von Ren, Shuling, Gaykalova, Daria A., Guo, Theresa, Favorov, Alexander V., Fertig, Elana J., Tamayo, Pablo, Callejas-Valera, Juan Luis, Allevato, Mike, Gilardi, Mara, Santos, Jessica, Fukusumi, Takahito, Sakai, Akihiro, Ando, Mizuo, Sadat, Sayed, Liu, Chao, Xu, Guorong, Fisch, Kathleen M., Wang, Zhiyong, Molinolo, Alfredo A., Gutkind, J. Silvio, Ideker, Trey, Koch, Wayne M., Califano, Joseph A.

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Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1 von Verhaak, Roel G.W., Hoadley, Katherine A., Purdom, Elizabeth, Wang, Victoria, Qi, Yuan, Wilkerson, Matthew D., Miller, C. Ryan, Ding, Li, Golub, Todd, Mesirov, Jill P., Alexe, Gabriele, Lawrence, Michael, O'Kelly, Michael, Tamayo, Pablo, Weir, Barbara A., Gabriel, Stacey, Winckler, Wendy, Gupta, Supriya, Jakkula, Lakshmi, Feiler, Heidi S., Hodgson, J. Graeme, James, C. David, Sarkaria, Jann N., Brennan, Cameron, Kahn, Ari, Spellman, Paul T., Wilson, Richard K., Speed, Terence P., Gray, Joe W., Meyerson, Matthew, Getz, Gad, Perou, Charles M., Hayes, D. Neil

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Gene Set Enrichment Analysis: A Knowledge-Based Approach for Interpreting Genome-Wide Expression Profiles von Subramanian, Aravind, Tamayo, Pablo, Mootha, Vamsi K., Mukherjee, Sayan, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Pomeroy, Scott L., Golub, Todd R., Lander, Eric S., Mesirov, Jill P.

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CHMP2A regulates tumor sensitivity to natural killer cell-mediated cytotoxicity von Bernareggi, Davide, Xie, Qi, Prager, Briana C., Yun, Jiyoung, Cruz, Luisjesus S., Pham, Timothy V., Kim, William, Lee, Xiqing, Coffey, Michael, Zalfa, Cristina, Azmoon, Pardis, Zhu, Huang, Tamayo, Pablo, Rich, Jeremy N., Kaufman, Dan S.

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High Performance Self-Compacting Concrete with Electric Arc Furnace Slag Aggregate and Cupola Slag Powder von Sosa, Israel, Thomas, Carlos, Polanco, Juan Antonio, Setién, Jesus, Tamayo, Pablo

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Role of ultraviolet mutational signature versus tumor mutation burden in predicting response to immunotherapy von Pham, Timothy V., Boichard, Amélie, Goodman, Aaron, Riviere, Paul, Yeerna, Huwate, Tamayo, Pablo, Kurzrock, Razelle

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Identification of RPS14 as a 5q- syndrome gene by RNA interference screen von Ebert, Benjamin L., Pretz, Jennifer, Bosco, Jocelyn, Chang, Cindy Y., Tamayo, Pablo, Galili, Naomi, Raza, Azra, Root, David E., Attar, Eyal, Ellis, Steven R., Golub, Todd R.

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Cannabinoids Promote Progression of HPV-Positive Head and Neck Squamous Cell Carcinoma via p38 MAPK Activation von Liu, Chao, Sadat, Sayed H, Ebisumoto, Koji, Sakai, Akihiro, Panuganti, Bharat A, Ren, Shuling, Goto, Yusuke, Haft, Sunny, Fukusumi, Takahito, Ando, Mizuo, Saito, Yuki, Guo, Theresa, Tamayo, Pablo, Yeerna, Huwate, Kim, William, Hubbard, Jacqueline, Sharabi, Andrew B, Gutkind, J Silvio, Califano, Joseph A

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A genetic basis for the variation in the vulnerability of cancer to DNA damage von Yard, Brian D., Adams, Drew J., Chie, Eui Kyu, Tamayo, Pablo, Battaglia, Jessica S., Gopal, Priyanka, Rogacki, Kevin, Pearson, Bradley E., Phillips, James, Raymond, Daniel P., Pennell, Nathan A., Almeida, Francisco, Cheah, Jaime H., Clemons, Paul A., Shamji, Alykhan, Peacock, Craig D., Schreiber, Stuart L., Hammerman, Peter S., Abazeed, Mohamed E.

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Metagenes and Molecular Pattern Discovery Using Matrix Factorization von Brunet, Jean-Philippe, Tamayo, Pablo, Golub, Todd R., Mesirov, Jill P., Lander, Eric S.

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