Integrative modeling of gene and genome evolution roots the archaeal tree of life von Williams, Tom A., Szöllősi, Gergely J., Spang, Anja, Foster, Peter G., Heaps, Sarah E., Boussau, Bastien, Ettema, Thijs J. G., Embley, T. Martin

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A rooted phylogeny resolves early bacterial evolution von Coleman, Gareth A, Davín, Adrián A, Mahendrarajah, Tara A, Szánthó, Lénárd L, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J, Williams, Tom A

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Trade-off between reducing mutational accumulation and increasing commitment to differentiation determines tissue organization von Demeter, Márton, Derényi, Imre, Szöllősi, Gergely J.

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The structure of the hematopoietic system can explain chronic myeloid leukemia progression von Pérez-Jiménez, Mario, Derényi, Imre, Szöllősi, Gergely J.

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ATP synthase evolution on a cross-braced dated tree of life von Mahendrarajah, Tara A., Moody, Edmund R. R., Schrempf, Dominik, Szánthó, Lénárd L., Dombrowski, Nina, Davín, Adrián A., Pisani, Davide, Donoghue, Philip C. J., Szöllősi, Gergely J., Williams, Tom A., Spang, Anja

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Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants von Harris, Brogan J., Clark, James W., Schrempf, Dominik, Szöllősi, Gergely J., Donoghue, Philip C. J., Hetherington, Alistair M., Williams, Tom A.

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Phylogenomics provides robust support for a two-domains tree of life von Williams, Tom A., Cox, Cymon J., Foster, Peter G., Szöllősi, Gergely J., Embley, T. Martin

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An estimate of the deepest branches of the tree of life from ancient vertically evolving genes von Moody, Edmund R R, Mahendrarajah, Tara A, Dombrowski, Nina, Clark, James W, Petitjean, Celine, Offre, Pierre, Szöllősi, Gergely J, Spang, Anja, Williams, Tom A

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A compartment size-dependent selective threshold limits mutation accumulation in hierarchical tissues von Grajzel, Dániel, Derényi, Imre, Szöllősi, Gergely J.

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Inferring the Deep Past from Molecular Data von Williams, Tom A, Schrempf, Dominik, Szöllősi, Gergely J, Cox, Cymon J, Foster, Peter G, Embley, T Martin

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Efficient Exploration of the Space of Reconciled Gene Trees von Szöllösi, Gergely J., Rosikiewicz, Wojciech, Boussau, Bastien, Tannier, Eric, Daubin, Vincent

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The Inference of Gene Trees with Species Trees von Szöllősi, Gergely J., Tannier, Eric, Daubin, Vincent, Boussau, Bastien

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The nature of the last universal common ancestor and its impact on the early Earth system von Moody, Edmund R. R., Álvarez-Carretero, Sandra, Mahendrarajah, Tara A., Clark, James W., Betts, Holly C., Dombrowski, Nina, Szánthó, Lénárd L., Boyle, Richard A., Daines, Stuart, Chen, Xi, Lane, Nick, Yang, Ziheng, Shields, Graham A., Szöllősi, Gergely J., Spang, Anja, Pisani, Davide, Williams, Tom A., Lenton, Timothy M., Donoghue, Philip C. J.

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Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations von Szöllősi, Gergely J, Boussau, Bastien, Abby, Sophie S, Tannier, Eric, Daubin, Vincent

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ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony von Jacox, Edwin, Chauve, Cedric, Szöllősi, Gergely J, Ponty, Yann, Scornavacca, Celine

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Damage and fluctuations induce loops in optimal transport networks von Katifori, Eleni, Szöllosi, Gergely J, Magnasco, Marcelo O

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Horizontal Gene Transfer and the History of Life von Daubin, Vincent, Szöllősi, Gergely J

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GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene  Family Tree Inference under Gene Duplication, Transfer, and Loss von Morel, Benoit, Kozlov, Alexey M, Stamatakis, Alexandros, Szöllősi, Gergely J

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Genome size evolution in the Archaea von Kellner, Siri, Spang, Anja, Offre, Pierre, Szöllősi, Gergely J., Petitjean, Celine, Williams, Tom A.

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Quantifying GC-Biased Gene Conversion in Great Ape Genomes Using Polymorphism-Aware Models von Borges, Rui, Szöllősi, Gergely J, Kosiol, Carolin

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