MicrobeTrace: Retooling molecular epidemiology for rapid public health response von Campbell, Ellsworth M., Boyles, Anthony, Shankar, Anupama, Kim, Jay, Knyazev, Sergey, Cintron, Roxana, Switzer, William M.

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Zoonotic viruses associated with illegally imported wildlife products von Smith, Kristine M, Anthony, Simon J, Switzer, William M, Epstein, Jonathan H, Seimon, Tracie, Jia, Hongwei, Sanchez, Maria D, Huynh, Thanh Thao, Galland, G Gale, Shapiro, Sheryl E, Sleeman, Jonathan M, McAloose, Denise, Stuchin, Margot, Amato, George, Kolokotronis, Sergios-Orestis, Lipkin, W Ian, Karesh, William B, Daszak, Peter, Marano, Nina

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HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014–2015 von Peters, Philip J, Pontones, Pamela, Hoover, Karen W, Patel, Monita R, Galang, Romeo R, Shields, Jessica, Blosser, Sara J, Spiller, Michael W, Combs, Brittany, Switzer, William M, Conrad, Caitlin, Gentry, Jessica, Khudyakov, Yury, Waterhouse, Dorothy, Owen, S. Michele, Chapman, Erika, Roseberry, Jeremy C, McCants, Veronica, Weidle, Paul J, Broz, Dita, Samandari, Taraz, Mermin, Jonathan, Walthall, Jennifer, Brooks, John T, Duwve, Joan M

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Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data von Oster, Alexandra M, France, Anne Marie, Panneer, Nivedha, Bañez Ocfemia, M Cheryl, Campbell, Ellsworth, Dasgupta, Sharoda, Switzer, William M, Wertheim, Joel O, Hernandez, Angela L

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Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States von Campbell, Ellsworth M., Jia, Hongwei, Shankar, Anupama, Hanson, Debra, Luo, Wei, Masciotra, Silvina, Owen, S. Michele, Oster, Alexandra M., Galang, Romeo R., Spiller, Michael W., Blosser, Sara J., Chapman, Erika, Roseberry, Jeremy C., Gentry, Jessica, Pontones, Pamela, Duwve, Joan, Peyrani, Paula, Kagan, Ron M., Whitcomb, Jeannette M., Peters, Philip J., Heneine, Walid, Brooks, John T., Switzer, William M.

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Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction von Knyazev, Sergey, Tsyvina, Viachaslau, Shankar, Anupama, Melnyk, Andrew, Artyomenko, Alexander, Malygina, Tatiana, Porozov, Yuri B, Campbell, Ellsworth M, Switzer, William M, Skums, Pavel, Mangul, Serghei, Zelikovsky, Alex

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Evaluation of the Abbott ARCHITECT HIV Ag/Ab combo assay for determining recent HIV-1 infection von Curtis, Kelly A., Rudolph, Donna L., Pan, Yi, Delaney, Kevin, Anastos, Kathryn, DeHovitz, Jack, Kassaye, Seble G., Hanson, Carl V., French, Audrey L., Golub, Elizabeth, Adimora, Adaora A., Ofotokun, Igho, Bolivar, Hector, Kempf, Mirjam-Colette, Peters, Philip J., Switzer, William M.

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Opioid Use Fueling HIV Transmission in an Urban Setting: An Outbreak of HIV Infection Among People Who Inject Drugs-Massachusetts, 2015-2018 von Alpren, Charles, Dawson, Erica L., John, Betsey, Cranston, Kevin, Panneer, Nivedha, Fukuda, H. Dawn, Roosevelt, Kathleen, Klevens, R. Monina, Bryant, Janice, Peters, Philip J., Lyss, Sheryl B., Switzer, William M., Burrage, Amanda, Murray, Ashley, Agnew-Brune, Christine, Stiles, Tracy, McClung, Paul, Campbell, Ellsworth M., Breen, Courtney, Randall, Liisa M., Dasgupta, Sharoda, Onofrey, Shauna, Bixler, Danae, Hampton, Kischa, Jaeger, Jenifer Leaf, Hsu, Katherine K., Adih, William, Callis, Barry, Goldman, Linda R., Danner, Susie P., Jia, Hongwei, Tumpney, Matthew, Board, Amy, Brown, Catherine, DeMaria, Alfred, Buchacz, Kate

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Natural selection favoring more transmissible HIV detected in United States molecular transmission network von Wertheim, Joel O., Oster, Alexandra M., Switzer, William M., Zhang, Chenhua, Panneer, Nivedha, Campbell, Ellsworth, Saduvala, Neeraja, Johnson, Jeffrey A., Heneine, Walid

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Spumaretroviruses: Updated taxonomy and nomenclature von Khan, Arifa S., Bodem, Jochen, Buseyne, Florence, Gessain, Antoine, Johnson, Welkin, Kuhn, Jens H., Kuzmak, Jacek, Lindemann, Dirk, Linial, Maxine L., Löchelt, Martin, Materniak-Kornas, Magdalena, Soares, Marcelo A., Switzer, William M.

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Evolutionary and Functional Analyses of the Interaction between the Myeloid Restriction Factor SAMHD1 and the Lentiviral Vpx Protein von Laguette, Nadine, Rahm, Nadia, Sobhian, Bijan, Chable-Bessia, Christine, Münch, Jan, Snoeck, Joke, Sauter, Daniel, Switzer, William M., Heneine, Walid, Kirchhoff, Frank, Delsuc, Frédéric, Telenti, Amalio, Benkirane, Monsef

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exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo von Xu, Wenqin, Stadler, Cynthia K., Gorman, Kristen, Jensen, Nathaniel, Kim, David, Zheng, HaoQiang, Tang, Shaohua, Switzer, William M., Pye, Geoffrey W., Eiden, Maribeth V.

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Absence of evidence of xenotropic murine leukemia virus-related virus infection in persons with chronic fatigue syndrome and healthy controls in the United States von Switzer, William M, Jia, Hongwei, Hohn, Oliver, Zheng, HaoQiang, Tang, Shaohua, Shankar, Anupama, Bannert, Norbert, Simmons, Graham, Hendry, R Michael, Falkenberg, Virginia R, Reeves, William C, Heneine, Walid

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Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria von Alexiev, Ivailo, Campbell, Ellsworth M., Knyazev, Sergey, Pan, Yi, Grigorova, Lyubomira, Dimitrova, Reneta, Partsuneva, Aleksandra, Gancheva, Anna, Kostadinova, Asya, Seguin-Devaux, Carole, Switzer, William M.

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Identification of a Human Immunodeficiency Virus Type 1 and Neurosyphilis Cluster in Vermont von Singh, Devika, Switzer, William M, Belcher, Roy, Daltry, Daniel, Read, Jennifer S

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Zoonotic infection of Brazilian primate workers with New World simian foamy virus von Muniz, Cláudia P, Cavalcante, Liliane T F, Jia, Hongwei, Zheng, HaoQiang, Tang, Shaohua, Augusto, Anderson M, Pissinatti, Alcides, Fedullo, Luiz P, Santos, André F, Soares, Marcelo A, Switzer, William M

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Dual Simian Foamy Virus/Human Immunodeficiency Virus Type 1 Infections in Persons from Côte d'Ivoire von Switzer, William M, Tang, Shaohua, Zheng, HaoQiang, Shankar, Anupama, Sprinkle, Patrick S, Sullivan, Vickie, Granade, Timothy C, Heneine, Walid

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A multiplexed RT-LAMP assay for detection of group M HIV-1 in plasma or whole blood von Curtis, Kelly A., Morrison, Daphne, Rudolph, Donna L., Shankar, Anupama, Bloomfield, Laura S.P., Switzer, William M., Owen, S. Michele

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Correction: Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure von Halbrook, Megan, Gadoth, Adva, Shankar, Anupama, Zheng, HaoQiang, Campbell, Ellsworth M, Hoff, Nicole A, Muyembe, Jean-Jacques, Wemakoy, Emile Okitolonda, Rimoin, Anne W, Switzer, William M

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Broadly neutralizing HIV-1 antibody reactivity in HIV tests: implications for diagnostics von Smith, Tara, Masciotra, Silvina, Luo, Wei, Sullivan, Vickie, Switzer, William M., Johnson, Jeffrey A., Heneine, Walid

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