Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum von Bezsudnova, Ekaterina Yu, Nikolaeva, Alena Yu, Bakunova, Alina K., Rakitina, Tatiana V., Suplatov, Dmitry A., Popov, Vladimir O., Boyko, Konstantin M.

Volltext

Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment von Shegay, Maksim V, Švedas, Vytas K, Voevodin, Vladimir V, Suplatov, Dmitry A, Popova, Nina N

Volltext

parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems von Shegay, Maksim V, Suplatov, Dmitry A, Popova, Nina N, Švedas, Vytas K, Voevodin, Vladimir V

Volltext

Mustguseal: a server for multiple structure-guided sequence alignment of protein families von Suplatov, Dmitry A, Kopylov, Kirill E, Popova, Nina N, Voevodin, Vladimir V, Švedas, Vytas K

Volltext

vsFilt: A Tool to Improve Virtual Screening by Structural Filtration of Docking Poses von Gushchina, Irina V, Polenova, Aleksandra M, Suplatov, Dmitry A, Švedas, Vytas K, Nilov, Dmitry K

Volltext

Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum von Bezsudnova, Ekaterina Yu, Boyko, Konstantin M., Nikolaeva, Alena Yu, Zeifman, Yulia S., Rakitina, Tatiana V., Suplatov, Dmitry A., Popov, Vladimir O.

Volltext

Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis von Bezsudnova, Ekaterina Yu, Stekhanova, Tatiana N., Suplatov, Dmitry A., Mardanov, Andrey V., Ravin, Nikolai V., Popov, Vladimir O.

Volltext

Simulating the Long-timescale Structural Behavior of Bacterial and Influenza Neuraminidases with Different HPC Resources

Volltext

The βD484N mutant of penicillin acylase from Escherichia coli is more resistant to inactivation by substrates and can effectively perform peptide synthesis in aqueous medium von Shcherbakova, Tatyana A., Panin, Nikolay V., Suplatov, Dmitry A., Shapovalova, Irina V., Švedas, Vytas K.

Volltext

Loop 422–437 in NanA from Streptococcus pneumoniae plays the role of an active site lid and is associated with allosteric regulation von Sharapova, Yana, Suplatov, Dmitry

Volltext

Catalytic and lectin domains in neuraminidase A from Streptococcus pneumoniae are capable of an intermolecular assembly: Implications for biofilm formation. Running title: "Intermo... von Sharapova, Yana, Svedas, Vytas, Suplatov, Dmitry

Volltext

Catalytic and lectin domains in neuraminidase A from Streptococcus pneumoniae are capable of an intermolecular assembly: Implications for biofilm formation von Sharapova, Yana, Švedas, Vytas, Suplatov, Dmitry

Volltext

Robust enzyme design: Bioinformatic tools for improved protein stability von Suplatov, Dmitry, Voevodin, Vladimir, Švedas, Vytas

Volltext

Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families von Suplatov, Dmitry, Timonina, Daria, Sharapova, Yana, Švedas, Vytas

Volltext

Neuraminidase A from Streptococcus pneumoniae has a modular organization of catalytic and lectin domains separated by a flexible linker von Sharapova, Yana, Suplatov, Dmitry, Švedas, Vytas

Volltext

Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies von Suplatov, Dmitry, Sharapova, Yana, Geraseva, Elizaveta, Švedas, Vytas

Volltext

Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies von Suplatov, Dmitry, Sharapova, Yana, Geraseva, Elizaveta, Svedas, Vytas

Volltext

Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies von Suplatov, Dmitry, Sharapova, Yana, Švedas, Vytas

Volltext

Computational design of a pH stable enzyme: understanding molecular mechanism of penicillin acylase's adaptation to alkaline conditions von Suplatov, Dmitry, Panin, Nikolay, Kirilin, Evgeny, Shcherbakova, Tatyana, Kudryavtsev, Pavel, Svedas, Vytas

Volltext

Bioinformatic analysis of subfamily-specific regions in 3D-structures of homologs to study functional diversity and conformational plasticity in protein superfamilies von Timonina, Daria, Sharapova, Yana, Švedas, Vytas, Suplatov, Dmitry

Volltext