Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women von Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.

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Temporal and spatial variation of the human microbiota during pregnancy von DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.

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Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems von Burstein, David, Sun, Christine L., Brown, Christopher T., Sharon, Itai, Anantharaman, Karthik, Probst, Alexander J., Thomas, Brian C., Banfield, Jillian F.

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Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome von Dudek, Natasha K., Sun, Christine L., Burstein, David, Kantor, Rose S., Aliaga Goltsman, Daniela S., Bik, Elisabeth M., Thomas, Brian C., Banfield, Jillian F., Relman, David A.

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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories von Sun, Christine L, Thomas, Brian C, Barrangou, Rodolphe, Banfield, Jillian F

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Persisting viral sequences shape microbial CRISPR-based immunity von Weinberger, Ariel D, Sun, Christine L, Pluciński, Mateusz M, Denef, Vincent J, Thomas, Brian C, Horvath, Philippe, Barrangou, Rodolphe, Gilmore, Michael S, Getz, Wayne M, Banfield, Jillian F

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Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time von Pride, David T, Sun, Christine L, Salzman, Julia, Rao, Nitya, Loomer, Peter, Armitage, Gary C, Banfield, Jillian F, Relman, David A

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Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid... von ALIAGA GOLTSMAN, Daniela S, DENEF, Vincent J, BAKER, Brett J, HAUSER, Loren, LAND, Miriam, SHAH, Manesh B, THELEN, Michael P, HETTICH, Robert L, BANFIELD, Jillian F, SINGER, Steven W, VERBERKMOES, Nathan C, LEFSRUD, Mark, MUELLER, Ryan S, DICK, Gregory J, SUN, Christine L, WHEELER, Korin E, ZEMLA, Adam

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Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant von Costello, Elizabeth K., Sun, Christine L., Carlisle, Erica M., Morowitz, Michael J., Banfield, Jillian F., Relman, David A.

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Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities von JUSTICE, Nicholas B, CHONGLE PAN, VERBERKMOES, Nathan, HETTICH, Robert, BANFIELD, Jillian F, MUELLER, Ryan, SPAULDING, Susan E, SHAH, Vega, SUN, Christine L, YELTON, Alexis P, MILLER, Christopher S, THOMAS, Brian C, SHAH, Manesh

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Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems von Greenlon, Alex, Sieradzki, Ella, Zablocki, Olivier, Koch, Benjamin J, Foley, Megan M, Kimbrel, Jeffrey A, Hungate, Bruce A, Blazewicz, Steven J, Nuccio, Erin E, Sun, Christine L, Chew, Aaron, Mancilla, Cynthia-Jeanette, Sullivan, Matthew B, Firestone, Mary, Pett-Ridge, Jennifer, Banfield, Jillian F

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Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome von Goltsman, Daniela S Aliaga, Sun, Christine L, Proctor, Diana M, DiGiulio, Daniel B, Robaczewska, Anna, Thomas, Brian C, Shaw, Gary M, Stevenson, David K, Holmes, Susan P, Banfield, Jillian F, Relman, David A

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Seasonal changes in methanogenesis and methanogenic community in three peatlands, new york state von Sun, Christine L, Brauer, Suzanna L, Cadillo-Quiroz, Hinsby, Zinder, Stephen H, Yavitt, Joseph B

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Strong bias in the bacterial CRISPR elements that confer immunity to phage von Paez-Espino, David, Morovic, Wesley, Sun, Christine L., Thomas, Brian C., Ueda, Ken-ichi, Stahl, Buffy, Barrangou, Rodolphe, Banfield, Jillian F.

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Phage mutations in response to CRISPR diversification in a bacterial population von Sun, Christine L., Barrangou, Rodolphe, Thomas, Brian C., Horvath, Philippe, Fremaux, Christophe, Banfield, Jillian F.

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Genome‐resolved viral ecology in a marine oxygen minimum zone von Vik, Dean, Gazitúa, Maria Consuelo, Sun, Christine L., Zayed, Ahmed A., Aldunate, Montserrat, Mulholland, Margaret R., Ulloa, Osvaldo, Sullivan, Matthew B.

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Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient von Sun, Christine L., Pratama, Akbar Adjie, Gazitúa, Maria Consuelo, Cronin, Dylan, McGivern, Bridget B., Wainaina, James M., Vik, Dean R., Zayed, Ahmed A., Bolduc, Benjamin, Wrighton, Kelly C., Rich, Virginia I., Sullivan, Matthew B.

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Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome von Sun, Christine L, Relman, David A

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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets von Vik, Dean, Bolduc, Benjamin, Roux, Simon, Sun, Christine L, Pratama, Akbar Adjie, Krupovic, Mart, Sullivan, Matthew B

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REPLY TO DELMONT AND EREN: Strain variants and population structure during the Deepwater Horizon oil spill von Probst, Alexander J., Hu, Ping, Sun, Christine L., Dubinsky, Eric A., Sieber, Christian M. K., Banfield, Jillian F., Andersen, Gary L.

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