DRAM for distilling microbial metabolism to automate the curation of microbiome function von Shaffer, Michael, Borton, Mikayla A., McGivern, Bridget B., Zayed, Ahmed A., La Rosa, Sabina Leanti, Solden, Lindsey M., Liu, Pengfei, Narrowe, Adrienne B., Rodriguez-Ramos, Josue, Bolduc, Benjamin, Gazitua, M. Consuelo, Daly, Rebecca A., Smith, Garrett J., Vik, Dean R., Pope, Phil B., Sullivan, Matthew B., Roux, Simon, Wrighton, Kelly C.

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The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology von Hurwitz, Bonnie L, Sullivan, Matthew B

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The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut von Gregory, Ann C., Zablocki, Olivier, Zayed, Ahmed A., Howell, Allison, Bolduc, Benjamin, Sullivan, Matthew B.

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Rising to the challenge: accelerated pace of discovery transforms marine virology von Brum, Jennifer R., Sullivan, Matthew B.

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Supporting Aspartate Biosynthesis Is an Essential Function of Respiration in Proliferating Cells von Sullivan, Lucas B., Gui, Dan Y., Hosios, Aaron M., Bush, Lauren N., Freinkman, Elizaveta, Vander Heiden, Matthew G.

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Lysogeny in nature: mechanisms, impact and ecology of temperate phages von Howard-Varona, Cristina, Hargreaves, Katherine R, Abedon, Stephen T, Sullivan, Matthew B

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Environment Impacts the Metabolic Dependencies of Ras-Driven Non-Small Cell Lung Cancer von Davidson, Shawn M., Papagiannakopoulos, Thales, Olenchock, Benjamin A., Heyman, Julia E., Keibler, Mark A., Luengo, Alba, Bauer, Matthew R., Jha, Abhishek K., O’Brien, James P., Pierce, Kerry A., Gui, Dan Y., Sullivan, Lucas B., Wasylenko, Thomas M., Subbaraj, Lakshmipriya, Chin, Christopher R., Stephanopolous, Gregory, Mott, Bryan T., Jacks, Tyler, Clish, Clary B., Vander Heiden, Matthew G.

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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks von Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H., Roux, Simon, Adriaenssens, Evelien M., Brister, J. Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B.

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The Proto-oncometabolite Fumarate Binds Glutathione to Amplify ROS-Dependent Signaling von Sullivan, Lucas B., Martinez-Garcia, Eva, Nguyen, Hien, Mullen, Andrew R., Dufour, Eric, Sudarshan, Sunil, Licht, Jonathan D., Deberardinis, Ralph J., Chandel, Navdeep S.

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VirSorter: mining viral signal from microbial genomic data von Roux, Simon, Enault, Francois, Hurwitz, Bonnie L, Sullivan, Matthew B

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Viral dark matter and virus-host interactions resolved from publicly available microbial genomes von Roux, Simon, Hallam, Steven J, Woyke, Tanja, Sullivan, Matthew B

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Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci von Smith, D J, Escott-Price, V, Davies, G, Bailey, M E S, Colodro-Conde, L, Ward, J, Vedernikov, A, Marioni, R, Cullen, B, Lyall, D, Hagenaars, S P, Liewald, D C M, Luciano, M, Gale, C R, Ritchie, S J, Hayward, C, Nicholl, B, Bulik-Sullivan, B, Adams, M, Couvy-Duchesne, B, Graham, N, Mackay, D, Evans, J, Smith, B H, Porteous, D J, Medland, S E, Martin, N G, Holmans, P, McIntosh, A M, Pell, J P, Deary, I J, O'Donovan, M C

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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses von Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.

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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses von Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, Gazitua, M. Consuelo, Vik, Dean, Sullivan, Matthew B., Roux, Simon

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Increased demand for NAD+ relative to ATP drives aerobic glycolysis von Luengo, Alba, Li, Zhaoqi, Gui, Dan Y., Sullivan, Lucas B., Zagorulya, Maria, Do, Brian T., Ferreira, Raphael, Naamati, Adi, Ali, Ahmed, Lewis, Caroline A., Thomas, Craig J., Spranger, Stefani, Matheson, Nicholas J., Vander Heiden, Matthew G.

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High-Throughput Survey of Ordering Configurations in MXene Alloys Across Compositions and Temperatures von Tan, Teck Leong, Jin, Hong Mei, Sullivan, Michael B., Anasori, Babak, Gogotsi, Yury

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Thioamide‐Directed Cobalt(III)‐Catalyzed Selective Amidation of C(sp3)−H Bonds von Tan, Peng Wen, Mak, Adrian M., Sullivan, Michael B., Dixon, Darren J., Seayad, Jayasree

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Tara Oceans: towards global ocean ecosystems biology von Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban

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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study von Kang, Dae-Wook, Adams, James B, Gregory, Ann C, Borody, Thomas, Chittick, Lauren, Fasano, Alessio, Khoruts, Alexander, Geis, Elizabeth, Maldonado, Juan, McDonough-Means, Sharon, Pollard, Elena L, Roux, Simon, Sadowsky, Michael J, Lipson, Karen Schwarzberg, Sullivan, Matthew B, Caporaso, J Gregory, Krajmalnik-Brown, Rosa

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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity von Roux, Simon, Emerson, Joanne B, Eloe-Fadrosh, Emiley A, Sullivan, Matthew B

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