Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans von Ha, Connie W.Y., Martin, Anthony, Sepich-Poore, Gregory D., Shi, Baochen, Wang, Yizhou, Gouin, Kenneth, Humphrey, Gregory, Sanders, Karenina, Ratnayake, Yasiru, Chan, Kelvin S.L., Hendrick, Gustaf, Caldera, J.R., Arias, Christian, Moskowitz, Jacob E., Ho Sui, Shannan J., Yang, Shaohong, Underhill, David, Brady, Matthew J., Knott, Simon, Kaihara, Kelly, Steinbaugh, Michael J., Li, Huiying, McGovern, Dermot P.B., Knight, Rob, Fleshner, Phillip, Devkota, Suzanne

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A single-cell survey of Drosophila blood von Tattikota, Sudhir Gopal, Cho, Bumsik, Liu, Yifang, Hu, Yanhui, Barrera, Victor, Steinbaugh, Michael J., Yoon, Sang-Ho, Comjean, Aram, Li, Fangge, Dervis, Franz, Hung, Ruei-Jiun, Nam, Jin-Wu, Sui, Shannan Ho, Shim, Jiwon, Perrimon, Norbert

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The CD38/NAD/SIRTUIN1/EZH2 Axis Mitigates Cytotoxic CD8 T Cell Function and Identifies Patients with SLE Prone to Infections von Katsuyama, Eri, Suarez-Fueyo, Abel, Bradley, Sean J., Mizui, Masayuki, Marin, Ana V., Mulki, Lama, Krishfield, Suzanne, Malavasi, Fabio, Yoon, Joon, Sui, Shannan J. Ho, Kyttaris, Vasileios C., Tsokos, George C.

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Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak von Gardy, Jennifer L, Johnston, James C, Sui, Shannan J. Ho, Cook, Victoria J, Shah, Lena, Brodkin, Elizabeth, Rempel, Shirley, Moore, Richard, Zhao, Yongjun, Holt, Robert, Varhol, Richard, Birol, Inanc, Lem, Marcus, Sharma, Meenu K, Elwood, Kevin, Jones, Steven J.M, Brinkman, Fiona S.L, Brunham, Robert C, Tang, Patrick

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Molecular characterization and cell type composition deconvolution of fibrosis in NAFLD von Pantano, Lorena, Agyapong, George, Shen, Yang, Zhuo, Zhu, Fernandez-Albert, Francesc, Rust, Werner, Knebel, Dagmar, Hill, Jon, Boustany-Kari, Carine M., Doerner, Julia F., Rippmann, Jörg F., Chung, Raymond T., Ho Sui, Shannan J., Simon, Eric, Corey, Kathleen E.

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Insulin Receptor Associates with Promoters Genome-wide and Regulates Gene Expression von Hancock, Melissa L., Meyer, Rebecca C., Mistry, Meeta, Khetani, Radhika S., Wagschal, Alexandre, Shin, Taehwan, Ho Sui, Shannan J., Näär, Anders M., Flanagan, John G.

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Epstein−Barr virus-encoded EBNA2 alters immune checkpoint PD-L1 expression by downregulating miR-34a in B-cell lymphomas von Anastasiadou, Eleni, Stroopinsky, Dina, Alimperti, Stella, Jiao, Alan L, Pyzer, Athalia R, Cippitelli, Claudia, Pepe, Giuseppina, Severa, Martina, Rosenblatt, Jacalyn, Etna, Marilena P, Rieger, Simone, Kempkes, Bettina, Coccia, Eliana M, Sui, Shannan J Ho, Chen, Christopher S, Uccini, Stefania, Avigan, David, Faggioni, Alberto, Trivedi, Pankaj, Slack, Frank J

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Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency von Cacchiarelli, Davide, Trapnell, Cole, Ziller, Michael J., Soumillon, Magali, Cesana, Marcella, Karnik, Rahul, Donaghey, Julie, Smith, Zachary D., Ratanasirintrawoot, Sutheera, Zhang, Xiaolan, Ho Sui, Shannan J., Wu, Zhaoting, Akopian, Veronika, Gifford, Casey A., Doench, John, Rinn, John L., Daley, George Q., Meissner, Alexander, Lander, Eric S., Mikkelsen, Tarjei S.

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The association of virulence factors with genomic islands von Ho Sui, Shannan J, Fedynak, Amber, Hsiao, William W L, Langille, Morgan G I, Brinkman, Fiona S L

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oPOSSUM: integrated tools for analysis of regulatory motif over-representation von Ho Sui, Shannan J, Fulton, Debra L, Arenillas, David J, Kwon, Andrew T, Wasserman, Wyeth W

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Transcriptional profiling of retinal astrocytes identifies a specific marker and points to functional specialization von Cullen, Paul F., Gammerdinger, William J., Ho Sui, Shannan J., Mazumder, Arpan Guha, Sun, Daniel

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Drosophila PDGF/VEGF signaling from muscles to hepatocyte-like cells protects against obesity von Ghosh, Arpan C., Tattikota, Sudhir Gopal, Liu, Yifang, Comjean, Aram, Hu, Yanhui, Barrera, Victor, Sui, Shannan J. Ho, Perrimon, Norbert

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Genomic regulatory blocks underlie extensive microsynteny conservation in insects von Engström, Pär G, Ho Sui, Shannan J, Drivenes, Oyvind, Becker, Thomas S, Lenhard, Boris

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Transcription factor SOX15 regulates stem cell pluripotency and promotes neural fate during differentiation by activating the neurogenic gene Hes5 von Choi, Eun-Bee, Vodnala, Munender, Saini, Prince, Anugula, Sharath, Zerbato, Madeleine, Ho, Jaclyn J., Wang, Jianing, Ho Sui, Shannan J., Yoon, Joon, Roels, Marielle, Inouye, Carla, Fong, Yick W.

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High-throughput detection of RNA processing in bacteria von Gill, Erin E, Chan, Luisa S, Winsor, Geoffrey L, Dobson, Neil, Lo, Raymond, Ho Sui, Shannan J, Dhillon, Bhavjinder K, Taylor, Patrick K, Shrestha, Raunak, Spencer, Cory, Hancock, Robert E W, Unrau, Peter J, Brinkman, Fiona S L

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Type I interferon signaling induces melanoma cell-intrinsic PD-1 and its inhibition antagonizes immune checkpoint blockade von Holzgruber, Julia, Martins, Christina, Kulcsar, Zsofi, Duplaine, Alexandra, Rasbach, Erik, Migayron, Laure, Singh, Praveen, Statham, Edith, Landsberg, Jennifer, Boniface, Katia, Seneschal, Julien, Hoetzenecker, Wolfram, Berdan, Emma L., Ho Sui, Shannan, Ramsey, Matthew R., Barthel, Steven R., Schatton, Tobias

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Toward interoperable bioscience data von Sansone, Susanna-Assunta, Rocca-Serra, Philippe, Field, Dawn, Maguire, Eamonn, Taylor, Chris, Hofmann, Oliver, Fang, Hong, Neumann, Steffen, Tong, Weida, Amaral-Zettler, Linda, Begley, Kimberly, Booth, Tim, Bougueleret, Lydie, Burns, Gully, Chapman, Brad, Clark, Tim, Coleman, Lee-Ann, Copeland, Jay, Das, Sudeshna, de Daruvar, Antoine, de Matos, Paula, Dix, Ian, Edmunds, Scott, Evelo, Chris T, Forster, Mark J, Gaudet, Pascale, Gilbert, Jack, Goble, Carole, Griffin, Julian L, Jacob, Daniel, Kleinjans, Jos, Harland, Lee, Haug, Kenneth, Hermjakob, Henning, Sui, Shannan J Ho, Laederach, Alain, Liang, Shaoguang, Marshall, Stephen, McGrath, Annette, Merrill, Emily, Reilly, Dorothy, Roux, Magali, Shamu, Caroline E, Shang, Catherine A, Steinbeck, Christoph, Trefethen, Anne, Williams-Jones, Bryn, Wolstencroft, Katherine, Xenarios, Ioannis, Hide, Winston

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Age-associated H3K9me2 loss alters the regenerative equilibrium between murine lung alveolar and bronchiolar progenitors von Rowbotham, Samuel P, Pessina, Patrizia, Garcia-de-Alba, Carolina, Jensen, Jake, Nguyen, Yvonne, Yoon, Joon, Li, Jingyun, Wong, Irene G, Fahey, Caroline, Moye, Aaron L, Chongsaritsinsuk, Joann, Bronson, Roderick, Ho Sui, Shannan J, Kim, Carla F

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The ORFIUS complex regulates ORC2 localization at replication origins von Yang, Zelei, Mogre, Saie, He, Ruiyang, Berdan, Emma L, Ho Sui, Shannan J, Hill, Sarah J

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Delineating tesamorelin response pathways in HIV-associated NAFLD using a targeted proteomic and transcriptomic approach von Fourman, Lindsay T., Stanley, Takara L., Billingsley, James M., Sui, Shannan J. Ho, Feldpausch, Meghan N., Boutin, Autumn, Zheng, Isabel, McClure, Colin M., Corey, Kathleen E., Torriani, Martin, Kleiner, David E., Hadigan, Colleen M., Chung, Raymond T., Grinspoon, Steven K.

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