DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment von Subramanian, Amarendran R, Weyer-Menkhoff, Jan, Kaufmann, Michael, Morgenstern, Burkhard

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DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment von Subramanian, Amarendran R, Kaufmann, Michael, Morgenstern, Burkhard

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DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS von Subramanian, Amarendran R, Hiran, Suvrat, Steinkamp, Rasmus, Meinicke, Peter, Corel, Eduardo, Morgenstern, Burkhard

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Multiple sequence alignment with user-defined constraints at GOBICS von Morgenstern, Burkhard, Werner, Nadine, Prohaska, Sonja J., Steinkamp, Rasmus, Schneider, Isabelle, Subramanian, Amarendran R., Stadler, Peter F., Weyer-Menkhoff, Jan

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High-level description of our algorithm to calculate a multiple alignment of a set of input sequences von Amarendran R Subramanian, Kaufmann, Michael, Morgenstern, Burkhard

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Exclusion of low-scoring regions from alignment fragments von Amarendran R Subramanian, Weyer-Menkhoff, Jan, Kaufmann, Michael, Morgenstern, Burkhard

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