A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia von Scott, Jr, William T, Benito-Vaquerizo, Sara, Zimmermann, Johannes, Bajić, Djordje, Heinken, Almut, Suarez-Diez, Maria, Schaap, Peter J

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Model‐driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation von Ark, Kees C. H., Aalvink, Steven, Suarez‐Diez, Maria, Schaap, Peter J., Vos, Willem M., Belzer, Clara

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Comparative proteomics of Geobacter sulfurreducens PCAT in response to acetate, formate and/or hydrogen as electron donor von Mollaei, Monir, Timmers, Peer H. A., Suarez‐Diez, Maria, Boeren, Sjef, Gelder, Antonie H., Stams, Alfons J. M., Plugge, Caroline M.

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Enzyme‐constrained models predict the dynamics of Saccharomyces cerevisiae growth in continuous, batch and fed‐batch bioreactors von Moreno‐Paz, Sara, Schmitz, Joep, Martins dos Santos, Vitor A. P., Suarez‐Diez, Maria

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Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain–Barré–Stohl syndrome von Gaspari, Erika, Koehorst, Jasper J., Frey, Joachim, Martins dos Santos, Vitor A.P., Suarez‐Diez, Maria

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Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate von Kamminga, Tjerko, Slagman, Simen‐Jan, Bijlsma, Jetta J. E., Martins dos Santos, Vitor A. P., Suarez‐Diez, Maria, Schaap, Peter J.

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Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system von Vilchez-Vargas, Ramiro, Geffers, Robert, Suárez-Diez, María, Conte, Ianina, Waliczek, Agnes, Kaser, Vanessa Sabrina, Kralova, Monika, Junca, Howard, Pieper, Dietmar H.

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Combinatorial optimization of pathway, process and media for the production of p‐coumaric acid by Saccharomyces cerevisiae von Moreno‐Paz, Sara, Hoek, Rianne, Eliana, Elif, Martins dos Santos, Vitor A. P., Schmitz, Joep, Suarez‐Diez, Maria

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Programmable bacterial catalysis – designing cells for biosynthesis of value-added compounds von Lam, Carolyn M.C., Suárez Diez, María, Godinho, Miguel, Martins dos Santos, Vítor A.P.

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Production of indole by Corynebacterium glutamicum microbial cell factories for flavor and fragrance applications von Mindt, Melanie, Beyraghdar Kashkooli, Arman, Suarez-Diez, Maria, Ferrer, Lenny, Jilg, Tatjana, Bosch, Dirk, Martins Dos Santos, Vitor, Wendisch, Volker F, Cankar, Katarina

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Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol von Atashgahi, Siavash, Lu, Yue, Zheng, Ying, Saccenti, Edoardo, Suarez-Diez, Maria, Ramiro-Garcia, Javier, Eisenmann, Heinrich, Elsner, Martin, Stams, Alfons Johannes Maria, Springael, Dirk, Dejonghe, Winnie, Smidt, Hauke

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Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets von Suarez-Diez, Maria, Porras, Santiago, Laguna-Teno, Felix, Schaap, Peter J., Tamayo-Ramos, Juan A.

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Making PBPK models more reproducible in practice von Domínguez-Romero, Elena, Mazurenko, Stanislav, Scheringer, Martin, Martins dos Santos, Vítor A P, Evelo, Chris T, Anton, Mihail, Hancock, John M, Županič, Anže, Suarez-Diez, Maria

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Commonalities and Differences in the Transcriptional Response of the Model Fungus Saccharomyces cerevisiae to Different Commercial Graphene Oxide Materials von Laguna-Teno, Felix, Suarez-Diez, Maria, Tamayo-Ramos, Juan Antonio

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Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning von Poncheewin, Wasin, van Diepeningen, Anne D., van der Lee, Theo A. J., Suarez-Diez, Maria, Schaap, Peter J.

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Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness von Duman-üzdamar, Zeynep Efsun, Martins dos Santos, Vitor A. P, Hugenholtz, Jeroen, Suarez-Diez, Maria

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Comparative proteomics of Geobacter sulfurreducens PCA T in response to acetate, formate and/or hydrogen as electron donor von Mollaei, Monir, Timmers, Peer H A, Suarez-Diez, Maria, Boeren, Sjef, van Gelder, Antonie H, Stams, Alfons J M, Plugge, Caroline M

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Intraspecies characterization of bacteria via evolutionary modeling of protein domains von Budimir, Iva, Giampieri, Enrico, Saccenti, Edoardo, Suarez-Diez, Maria, Tarozzi, Martina, Dall’Olio, Daniele, Merlotti, Alessandra, Curti, Nico, Remondini, Daniel, Castellani, Gastone, Sala, Claudia

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Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential von Zondervan, Niels A., dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Saccenti, Edoardo

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Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access von Subramanian, Kalyanasundaram, Góra, Artur, Spruijt, Ruud, Mitusińska, Karolina, Suarez-Diez, Maria, Martins Dos Santos, Vitor, Schaap, Peter J

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