The interplay of epigenetic marks during stem cell differentiation and development von Atlasi, Yaser, Stunnenberg, Hendrik G.

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The Transcriptional and Epigenomic Foundations of Ground State Pluripotency von Marks, Hendrik, Kalkan, Tüzer, Menafra, Roberta, Denissov, Sergey, Jones, Kenneth, Hofemeister, Helmut, Nichols, Jennifer, Kranz, Andrea, Francis Stewart, A., Smith, Austin, Stunnenberg, Hendrik G.

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Dnmt3L Antagonizes DNA Methylation at Bivalent Promoters and Favors DNA Methylation at Gene Bodies in ESCs von Neri, Francesco, Krepelova, Anna, Incarnato, Danny, Maldotti, Mara, Parlato, Caterina, Galvagni, Federico, Matarese, Filomena, Stunnenberg, Hendrik G., Oliviero, Salvatore

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The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery von Stunnenberg, Hendrik G., Hirst, Martin

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Trained immunity: A program of innate immune memory in health and disease von Netea, Mihai G., Joosten, Leo A. B., Latz, Eicke, Mills, Kingston H. G., Natoli, Gioacchino, Stunnenberg, Hendrik G., O'Neill, Luke A. J., Xavier, Ramnik J.

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DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation von Farlik, Matthias, Halbritter, Florian, Müller, Fabian, Choudry, Fizzah A., Ebert, Peter, Klughammer, Johanna, Farrow, Samantha, Santoro, Antonella, Ciaurro, Valerio, Mathur, Anthony, Uppal, Rakesh, Stunnenberg, Hendrik G., Ouwehand, Willem H., Laurenti, Elisa, Lengauer, Thomas, Frontini, Mattia, Bock, Christoph

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Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells von Habibi, Ehsan, Brinkman, Arie B., Arand, Julia, Kroeze, Leonie I., Kerstens, Hindrik H.D., Matarese, Filomena, Lepikhov, Konstantin, Gut, Marta, Brun-Heath, Isabelle, Hubner, Nina C., Benedetti, Rosaria, Altucci, Lucia, Jansen, Joop H., Walter, Jörn, Gut, Ivo G., Marks, Hendrik, Stunnenberg, Hendrik G.

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Candida albicans Infection Affords Protection against Reinfection via Functional Reprogramming of Monocytes von Quintin, Jessica, Saeed, Sadia, Martens, Joost H.A., Giamarellos-Bourboulis, Evangelos J., Ifrim, Daniela C., Logie, Colin, Jacobs, Liesbeth, Jansen, Trees, Kullberg, Bart-Jan, Wijmenga, Cisca, Joosten, Leo A.B., Xavier, Ramnik J., van der Meer, Jos W.M., Stunnenberg, Hendrik G., Netea, Mihai G.

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Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells von De Simone, Marco, Arrigoni, Alberto, Rossetti, Grazisa, Gruarin, Paola, Ranzani, Valeria, Politano, Claudia, Bonnal, Raoul J.P., Provasi, Elena, Sarnicola, Maria Lucia, Panzeri, Ilaria, Moro, Monica, Crosti, Mariacristina, Mazzara, Saveria, Vaira, Valentina, Bosari, Silvano, Palleschi, Alessandro, Santambrogio, Luigi, Bovo, Giorgio, Zucchini, Nicola, Totis, Mauro, Gianotti, Luca, Cesana, Giancarlo, Perego, Roberto A., Maroni, Nirvana, Pisani Ceretti, Andrea, Opocher, Enrico, De Francesco, Raffaele, Geginat, Jens, Stunnenberg, Hendrik G., Abrignani, Sergio, Pagani, Massimiliano

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Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells von von Meyenn, Ferdinand, Iurlaro, Mario, Habibi, Ehsan, Liu, Ning Qing, Salehzadeh-Yazdi, Ali, Santos, Fátima, Petrini, Edoardo, Milagre, Inês, Yu, Miao, Xie, Zhenqing, Kroeze, Leonie I., Nesterova, Tatyana B., Jansen, Joop H., Xie, Hehuang, He, Chuan, Reik, Wolf, Stunnenberg, Hendrik G.

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Tracking the embryonic stem cell transition from ground state pluripotency von Kalkan, Tüzer, Olova, Nelly, Roode, Mila, Mulas, Carla, Lee, Heather J, Nett, Isabelle, Marks, Hendrik, Walker, Rachael, Stunnenberg, Hendrik G, Lilley, Kathryn S, Nichols, Jennifer, Reik, Wolf, Bertone, Paul, Smith, Austin

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Bacille Calmette-Guérin induces NOD2-dependent nonspecific protection from reinfection via epigenetic reprogramming of monocytes von Kleinnijenhuis, Johanneke, Quintin, Jessica, Preijers, Frank, Joosten, Leo A. B, Ifrim, Daniela C, Saeed, Sadia, Jacobs, Cor, van Loenhout, Joke, de Jong, Dirk, Stunnenberg, Hendrik G, Xavier, Ramnik J, van der Meer, Jos W. M, van Crevel, Reinout, Netea, Mihai G

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STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells von Peng, Tianran, Zhai, Yanan, Atlasi, Yaser, ter Huurne, Menno, Marks, Hendrik, Stunnenberg, Hendrik G., Megchelenbrink, Wout

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Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant von Denissov, Sergei, Hofemeister, Helmut, Marks, Hendrik, Kranz, Andrea, Ciotta, Giovanni, Singh, Sukhdeep, Anastassiadis, Konstantinos, Stunnenberg, Hendrik G, Stewart, A Francis

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BLUEPRINT: mapping human blood cell epigenomes von Martens, Joost H A, Stunnenberg, Hendrik G

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Distinct Cell-Cycle Control in Two Different States of Mouse Pluripotency von ter Huurne, Menno, Chappell, James, Dalton, Stephen, Stunnenberg, Hendrik G.

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Dynamic binding of RBPJ is determined by Notch signaling status von Castel, David, Mourikis, Philippos, Bartels, Stefanie J J, Brinkman, Arie B, Tajbakhsh, Shahragim, Stunnenberg, Hendrik G

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Quantitative comparison of genome-wide DNA methylation mapping technologies von Brinkman, Arie B, Meissner, Alexander, Gu, Hongcang, Müller, Fabian, Bock, Christoph, Jäger, Natalie, Tomazou, Eleni M, Stunnenberg, Hendrik G, Gnirke, Andreas, Simmer, Femke

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Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk von Brinkman, Arie B, Gu, Hongcang, Bartels, Stefanie J J, Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander, Stunnenberg, Hendrik G

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Transcriptional and functional profiling defines human small intestinal macrophage subsets von Bujko, Anna, Atlasy, Nader, Landsverk, Ole J B, Richter, Lisa, Yaqub, Sheraz, Horneland, Rune, Øyen, Ole, Aandahl, Einar Martin, Aabakken, Lars, Stunnenberg, Hendrik G, Bækkevold, Espen S, Jahnsen, Frode L

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