P050 Enterocyte microvillus length and associated gene expression are reduced in Crohn’s disease von VanDussen, K L, Li, K, Stojmirović, A, Liu, T -C, Kimes, P K, Perrigoue, J G, Friedman, J R, Towne, J E, Head, R D, Stappenbeck, T

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Information flow in interaction networks von Stojmirović, Aleksandar, Yu, Yi-Kuo

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A biopsy and blood based molecular biomarker of inflammation in inflammatory bowel disease von Argmann, C., Hou, R., Ungaro, R., Irizar, H., Huang, R., Kosoy, R., Venkat, S., Song, W.M., Di’Narzo, AF, Losic, B., Hao, K., Peters, L., Comella, P.H., Wei, G., Atreja, A., Mahajan, M., Iuga, A., Desai, P. T., Branigan, P., Stojmirovic, A., Perrigoue, J., Brodmerkel, C., Curran, M., Friedman, J., Hart, A., Lamousé-Smith, E., Wehkamp, J., Mehandru, S., Schadt, E.E., Sands, B.E., Dubinsky, M.C., Colombel, J.-F., Kasarskis, A., Suárez-Fariñas, M.

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P328 In silico evaluation and pre-clinical efficacy of anti-TNF and anti-IL-23 combination therapy in Inflammatory Bowel Disease von Perrigoue, J, Muniz-Bongers, L, Ong, L, Chen, Y, Chang, L, Ngo, K, Stojmirovic, A, O’Brien, C, Germinaro, M, Rao, R, Vetter, M, Towne, J

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Topology-Function Conservation in Protein-Protein Interaction Networks von Davis, D, Yaveroğlu, ÖN, Malod-Dognin, N, Stojmirovic, A, Pržulj, N

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Geometric aspects of biological sequence comparison von Stojmirović, Aleksandar, Yu, Yi-Kuo

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OP17 A molecular measure of inflammation in IBD patients based on transcriptional profiles from 2495 intestinal biopsies von Huang, R, Irizar, H, Kosoy, R, Song, W-m, Dinarzo, A, Hao, K, Rogers, J, Atreja, A, Mahajan, M, Stojmirovic, A, Perrigoue, J, Brodmerkel, C, Plevy, S, Friedman, J, Colombel, J-F, Dubinsky, M, Sands, B, Schadt, E, Kasarskis, A, Losic, B, Argmann, C, Suarez-Farinas, M

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DOP012 Disease demarcation in ulcerative colitis is associated with different patterns of gene expression von Suarez-Farinas, M, Huang, R, Kosoy, R, Irizar, A, Losic, B, Wei, G, Peters, L, Song, W -m, Di Narzo, A, Wang, W, Perrigoue, J, Castillo, A, Rogers, J, Atreja, A, Hurley, A, Mahajan, M, Zhang, B, Stojmirovic, A, Curran, M, Dobrin, R, Dubinsky, M, Hao, K, Zhu, J, Schadt, E, Plevy, S, Friedman, J, Brodmerkel, C, Sands, B, Kasarskis, A, Ungaro, R, Argmann, C, Colombel, J -F

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Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease von VanDussen, Kelli L., Stojmirović, Aleksandar, Li, Katherine, Liu, Ta-Chiang, Kimes, Patrick K., Muegge, Brian D., Simpson, Katherine F., Ciorba, Matthew A., Perrigoue, Jacqueline G., Friedman, Joshua R., Towne, Jennifer E., Head, Richard D., Stappenbeck, Thaddeus S.

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Building a hierarchical organization of protein complexes out of protein association data von Stojmirović, Aleksandar, Yu, Yi-Kuo

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P066 INTESTINAL EPITHELIAL MICROVILLI ARE ABNORMAL IN CROHN'S DISEASE von VanDussen, Kelli L., Stojmirović, Aleksandar, Liu, Ta-Chiang, Kimes, Patrick K., Perrigoue, Jacqueline G., Friedman, Joshua R., Towne, Jennifer E., Head, Richard D., Stappenbeck, Thaddeus S.

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280 THIOPURINE USE IN IBD IS ASSOCIATED WITH A STRONG IMPACT ON B CELLS PROVIDING FURTHER EXPLANATION FOR INCREASED EFFICACY OF ITS COMBINATION THERAPY WITH ANTI-TNF von Kosoy, Roman, Ungaro, Ryan C., Huang, Ruiqi, Kim-Schulze, Seunghee, Rahman, Adeeb, Mehandru, Saurabh, Perrigoue, Jacqueline, Merad, Miriam, Stojmirović, Aleksandar, Friedman, Joshua, Schadt, Eric E., Dubinsky, Marla C, Sands, Bruce E., Kasarskis, Andrew, Colombel, Jean Frederic, Argmann, Carmen A., Suarez-Farinas, Mayte

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P066 INTESTINAL EPITHELIAL MICROVILLI ARE ABNORMAL IN CROHN'S DISEASE von VanDussen, Kelli L, Stojmirović, Aleksandar, Liu, Ta-Chiang, Kimes, Patrick K, Perrigoue, Jacqueline G, Friedman, Joshua R, Towne, Jennifer E, Head, Richard D, Stappenbeck, Thaddeus S

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Robust and accurate data enrichment statistics via distribution function of sum of weights von Stojmirović, Aleksandar, Yu, Yi-Kuo

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Log-odds sequence logos von Yu, Yi-Kuo, Capra, John A, Stojmirović, Aleksandar, Landsman, David, Altschul, Stephen F

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Information flow in interaction networks II: channels, path lengths, and potentials von Stojmirović, Aleksandar, Yu, Yi-Kuo

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Tu1802 - Disease Demarcation in Ulcerative Colitis is Associated with Different Patterns of Gene Expression von Suarez-Farinas, Mayte, Huang, Ruiqi, Kosoy, Roman, Irizar, Aritz, Losic, Bojan, Wei, Gabrielle, Peters, Lauren A., Song, Won-min, Di Narzo, Antonio F., Wang, Wenhui, Perrigoue, Jacqueline, Castillo, Anabella, Rogers, Jason, Atreja, Ashish, Hurley, Amanda, Mahajan, Milind, Zhang, Bin, Stojmirović, Aleksandar, Curran, Mark, Dobrin, Radu, Dubinsky, Marla, Hao, Ke, Zhu, Jun, Schadt, Eric E., Plevy, Scott, Friedman, Joshua R., Brodmerkel, Carrie, Sands, Bruce E., Kasarskis, Andrew, Ungaro, Ryan C., Colombel, Jean Frederic, Argmann, Carmen A.

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ITM Probe: analyzing information flow in protein networks von Stojmirović, Aleksandar, Yu, Yi-Kuo

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CytoITMprobe: a network information flow plugin for Cytoscape von Stojmirović, Aleksandar, Bliskovsky, Alexander, Yu, Yi-Kuo

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CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores von STOJMIROVIC, Aleksandar, BLISKOVSKY, Alexander, YU, Yi-Kuo

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