Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves von Cutts, Catherine S, Eglen, Stephen J

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Ten simple rules for writing Dockerfiles for reproducible data science von Nüst, Daniel, Sochat, Vanessa, Marwick, Ben, Eglen, Stephen J, Head, Tim, Hirst, Tony, Evans, Benjamin D

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Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures von Hyvärinen, Tanja, Hyysalo, Anu, Kapucu, Fikret Emre, Aarnos, Laura, Vinogradov, Andrey, Eglen, Stephen J., Ylä-Outinen, Laura, Narkilahti, Susanna

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Ten Simple Rules for Taking Advantage of Git and GitHub von Perez-Riverol, Yasset, Gatto, Laurent, Wang, Rui, Sachsenberg, Timo, Uszkoreit, Julian, Leprevost, Felipe da Veiga, Fufezan, Christian, Ternent, Tobias, Eglen, Stephen J, Katz, Daniel S, Pollard, Tom J, Konovalov, Alexander, Flight, Robert M, Blin, Kai, Vizcaíno, Juan Antonio

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Following the ontogeny of retinal waves: pan‐retinal recordings of population dynamics in the neonatal mouse von Maccione, Alessandro, Hennig, Matthias H., Gandolfo, Mauro, Muthmann, Oliver, Coppenhagen, James, Eglen, Stephen J., Berdondini, Luca, Sernagor, Evelyne

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CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 2; peer revi... von Nüst, Daniel, Eglen, Stephen J

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Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates von Cotterill, Ellese, Hall, Diana, Wallace, Kathleen, Mundy, William R., Eglen, Stephen J., Shafer, Timothy J.

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CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 1; peer revi... von Nüst, Daniel, Eglen, Stephen J

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meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays von Gelfman, Sahar, Wang, Quanli, Lu, Yi-Fan, Hall, Diana, Bostick, Christopher D, Dhindsa, Ryan, Halvorsen, Matt, McSweeney, K Melodi, Cotterill, Ellese, Edinburgh, Tom, Beaumont, Michael A, Frankel, Wayne N, Petrovski, Slavé, Allen, Andrew S, Boland, Michael J, Goldstein, David B, Eglen, Stephen J

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A quick guide to teaching R programming to computational biology students von Eglen, Stephen J

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Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex? von Schottdorf, Manuel, Eglen, Stephen J, Wolf, Fred, Keil, Wolfgang

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Sepsis-3 criteria in AmsterdamUMCdb: open-source code implementation von Edinburgh, Tom, Eglen, Stephen J, Thoral, Patrick, Elbers, Paul, Ercole, Ari

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From random to regular: Variation in the patterning of retinal mosaics von Keeley, Patrick W., Eglen, Stephen J., Reese, Benjamin E.

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Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns von Charlesworth, Paul, Morton, Andrew, Eglen, Stephen J., Komiyama, Noboru H., Grant, Seth G.N.

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Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus von Gjorgjieva, Julijana, Toyoizumi, Taro, Eglen, Stephen J

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A molecular mechanism for the topographic alignment of convergent neural maps von Savier, Elise, Eglen, Stephen J, Bathélémy, Amélie, Perraut, Martine, Pfrieger, Frank W, Lemke, Greg, Reber, Michael

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A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks von Cotterill, Ellese, Charlesworth, Paul, Thomas, Christopher W, Paulsen, Ole, Eglen, Stephen J

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Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling von Gjorgjieva, Julijana, Berni, Jimena, Evers, Jan Felix, Eglen, Stephen J

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Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus von Leiwe, Marcus N, Hendry, Aenea C, Bard, Andrew D, Eglen, Stephen J, Lowe, Andrew S, Thompson, Ian D

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Causality indices for bivariate time series data: A comparative review of performance von Edinburgh, Tom, Eglen, Stephen J., Ercole, Ari

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