Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons von Song, Qingxin, Zhang, Tianzhen, Stelly, David M, Chen, Z Jeffrey

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miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development von Guan, Xueying, Pang, Mingxiong, Nah, Gyoungju, Shi, Xiaoli, Ye, Wenxue, Stelly, David M., Chen, Z. Jeffrey

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Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement von Chen, Z. Jeffrey, Sreedasyam, Avinash, Ando, Atsumi, Song, Qingxin, De Santiago, Luis M., Hulse-Kemp, Amanda M., Ding, Mingquan, Ye, Wenxue, Kirkbride, Ryan C., Jenkins, Jerry, Plott, Christopher, Lovell, John, Lin, Yu-Ming, Vaughn, Robert, Liu, Bo, Simpson, Sheron, Scheffler, Brian E., Wen, Li, Saski, Christopher A., Grover, Corrinne E., Hu, Guanjing, Conover, Justin L., Carlson, Joseph W., Shu, Shengqiang, Boston, Lori B., Williams, Melissa, Peterson, Daniel G., McGee, Keith, Jones, Don C., Wendel, Jonathan F., Stelly, David M., Grimwood, Jane, Schmutz, Jeremy

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Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta von Kim, Hee Jin, Hinchliffe, Doug J, Triplett, Barbara A, Chen, Z Jeffrey, Stelly, David M, Yeater, Kathleen M, Moon, Hong S, Gilbert, Matthew K, Thyssen, Gregory N, Turley, Rickie B, Fang, David D

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Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement von Zhang, Tianzhen, Hu, Yan, Jiang, Wenkai, Fang, Lei, Guan, Xueying, Chen, Jiedan, Zhang, Jinbo, Saski, Christopher A, Scheffler, Brian E, Stelly, David M, Hulse-Kemp, Amanda M, Wan, Qun, Liu, Bingliang, Liu, Chunxiao, Wang, Sen, Pan, Mengqiao, Wang, Yangkun, Wang, Dawei, Ye, Wenxue, Chang, Lijing, Zhang, Wenpan, Song, Qingxin, Kirkbride, Ryan C, Chen, Xiaoya, Dennis, Elizabeth, Llewellyn, Danny J, Peterson, Daniel G, Thaxton, Peggy, Jones, Don C, Wang, Qiong, Xu, Xiaoyang, Zhang, Hua, Wu, Huaitong, Zhou, Lei, Mei, Gaofu, Chen, Shuqi, Tian, Yue, Xiang, Dan, Li, Xinghe, Ding, Jian, Zuo, Qiyang, Tao, Linna, Liu, Yunchao, Li, Ji, Lin, Yu, Hui, Yuanyuan, Cao, Zhisheng, Cai, Caiping, Zhu, Xiefei, Jiang, Zhi, Zhou, Baoliang, Guo, Wangzhen, Li, Ruiqiang, Chen, Z Jeffrey

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Genome Editing, Gene Drives, and Synthetic Biology: Will They Contribute to Disease-Resistant Crops, and Who Will Benefit? von Pixley, Kevin V, Falck-Zepeda, Jose B, Giller, Ken E, Glenna, Leland L, Gould, Fred, Mallory-Smith, Carol A, Stelly, David M, Stewart, C. Neal

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DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton von Page, Justin T, Liechty, Zach S, Alexander, Rich H, Clemons, Kimberly, Hulse-Kemp, Amanda M, Ashrafi, Hamid, Van Deynze, Allen, Stelly, David M, Udall, Joshua A

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Toward product-based regulation of crops von Gould, Fred, Amasino, Richard M., Brossard, Dominique, Buell, C. Robin, Dixon, Richard A., Falck-Zepeda, Jose B., Gallo, Michael A., Giller, Ken E., Glenna, Leland L., Griffin, Timothy, Magraw, Daniel, Mallory-Smith, Carol, Pixley, Kevin V., Ransom, Elizabeth P., Stelly, David M., Stewart, C. Neal

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Activation of Arabidopsis seed hair development by cotton fiber-related genes von Guan, Xueying, Lee, Jinsuk J, Pang, Mingxiong, Shi, Xiaoli, Stelly, David M, Chen, Z Jeffrey

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Chromosome substitution lines with improved essential mineral nutrients and fiber quality traits in Upland cotton von Saha, Sukumar, Tewolde, Haile, Jenkins, Johnie N., McCarty, Jack C., Stelly, David M.

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Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.... von Pang, Mingxiong, Woodward, Andrew W, Agarwal, Vikram, Guan, Xueying, Ha, Misook, Ramachandran, Vanitharan, Chen, Xuemei, Triplett, Barbara A, Stelly, David M, Chen, Z. Jeffrey

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The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution von Grover, Corrinne E., Pan, Mengqiao, Yuan, Daojun, Arick, Mark A., Hu, Guanjing, Brase, Logan, Stelly, David M., Lu, Zefu, Schmitz, Robert J., Peterson, Daniel G., Wendel, Jonathan F., Udall, Joshua A.

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Enhancing Upland cotton for drought resilience, productivity, and fiber quality: comparative evaluation and genetic dissection von Ulloa, Mauricio, De Santiago, Luis M., Hulse-Kemp, Amanda M., Stelly, David M., Burke, John J.

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Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm von Elassbli, Hanan, Abdelraheem, Abdelraheem, Zhu, Yi, Teng, Zonghua, Wheeler, Terry A., Kuraparthy, Vasu, Hinze, Lori, Stelly, David M., Wedegaertner, Tom, Zhang, Jinfa

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A novel and efficient method for identifying cotton leafroll dwarf virus infection in upland cotton (Gossypium hirsutum) von Taluja, Serina M., Cheek, Brianna L., Vaughn, Robert N., Alabi, Olufemi J., Holme, John E., Jain, Nisha, Stelly, David M.

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Sampling nucleotide diversity in cotton von Van Deynze, Allen, Stoffel, Kevin, Lee, Mike, Wilkins, Thea A, Kozik, Alexander, Cantrell, Roy G, Yu, John Z, Kohel, Russel J, Stelly, David M

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Effect of chromosome substitutions from Gossypium barbadense L., G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonseed protein and oil content von Saha, Sukumar, Bellaloui, Nacer, Jenkins, Johnie N., McCarty, Jack C., Stelly, David M.

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Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp von Hulse-Kemp, Amanda M, Lemm, Jana, Plieske, Joerg, Ashrafi, Hamid, Buyyarapu, Ramesh, Fang, David D, Frelichowski, James, Giband, Marc, Hague, Steve, Hinze, Lori L, Kochan, Kelli J, Riggs, Penny K, Scheffler, Jodi A, Udall, Joshua A, Ulloa, Mauricio, Wang, Shirley S, Zhu, Qian-Hao, Bag, Sumit K, Bhardwaj, Archana, Burke, John J, Byers, Robert L, Claverie, Michel, Gore, Michael A, Harker, David B, Islam, Md S, Jenkins, Johnie N, Jones, Don C, Lacape, Jean-Marc, Llewellyn, Danny J, Percy, Richard G, Pepper, Alan E, Poland, Jesse A, Mohan Rai, Krishan, Sawant, Samir V, Singh, Sunil Kumar, Spriggs, Andrew, Taylor, Jen M, Wang, Fei, Yourstone, Scott M, Zheng, Xiuting, Lawley, Cindy T, Ganal, Martin W, Van Deynze, Allen, Wilson, Iain W, Stelly, David M

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Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids von Saski, Christopher A., Scheffler, Brian E., Hulse-Kemp, Amanda M., Liu, Bo, Song, Qingxin, Ando, Atsumi, Stelly, David M., Scheffler, Jodi A., Grimwood, Jane, Jones, Don C., Peterson, Daniel G., Schmutz, Jeremy, Chen, Z. Jeffery

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Toward Sequencing Cotton (Gossypium) Genomes von Chen, Z. Jeffrey, Scheffler, Brian E, Dennis, Elizabeth, Triplett, Barbara A, Zhang, Tianzhen, Guo, Wangzhen, Chen, Xiaoya, Stelly, David M, Rabinowicz, Pablo D, Town, Christopher D, Arioli, Tony, Brubaker, Curt, Cantrell, Roy G, Lacape, Jean-Marc, Ulloa, Mauricio, Chee, Peng, Gingle, Alan R, Haigler, Candace H, Percy, Richard, Saha, Sukumar, Wilkins, Thea, Wright, Robert J, Van Deynze, Allen, Zhu, Yuxian, Yu, Shuxun, Abdurakhmonov, Ibrokhim, Katageri, Ishwarappa, Kumar, P. Ananda, Mehboob-ur-Rahman, Zafar, Yusuf, Yu, John Z, Kohel, Russell J, Wendel, Jonathan F, Paterson, Andrew H

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