Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria von Monteil, Caroline L., Grouzdev, Denis S., Perrière, Guy, Alonso, Béatrice, Rouy, Zoé, Cruveiller, Stéphane, Ginet, Nicolas, Pignol, David, Lefevre, Christopher T.

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Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts von Tang, Mingxing, Bouchez, Olivier, Cruveiller, Stéphane, Masson-Boivin, Catherine, Capela, Delphine

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Chemical Evolution of a Bacterium's Genome von Marlière, Philippe, Patrouix, Julien, Döring, Volker, Herdewijn, Piet, Tricot, Sabine, Cruveiller, Stéphane, Bouzon, Madeleine, Mutzel, Rupert

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Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges von Gordon, Jonathan L, Lefeuvre, Pierre, Escalon, Aline, Barbe, Valérie, Cruveiller, Stéphane, Gagnevin, Lionel, Pruvost, Olivier

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MaGe: a microbial genome annotation system supported by synteny results von Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, Lajus, Aurélie, Pascal, Géraldine, Scarpelli, Claude, Médigue, Claudine

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The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions von Ghignone, Stefano, Salvioli, Alessandra, Anca, Iulia, Lumini, Erica, Ortu, Giuseppe, Petiti, Luca, Cruveiller, Stéphane, Bianciotto, Valeria, Piffanelli, Pietro, Lanfranco, Luisa, Bonfante, Paola

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Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia von Vijayvargiya, Prakhar, Feri, Adeline, Mairey, Mathilde, Rouillon, Cécile, Jeraldo, Patricio R, Esquer Garrigos, Zerelda, Thoendel, Matthew J, Greenwood-Quaintance, Kerryl E, Sohail, M Rizwan, Sampathkumar, Priya, Spychalla, Megan T, Stewart, A K, Patnaik, Mrinal M, Tande, Aaron J, Cruveiller, Stéphane, Hannet, Irene, Beurdeley, Pascale, Patel, Robin

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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis von Supply, Philip, Marceau, Michael, Mangenot, Sophie, Roche, David, Rouanet, Carine, Khanna, Varun, Majlessi, Laleh, Criscuolo, Alexis, Tap, Julien, Pawlik, Alexandre, Fiette, Laurence, Orgeur, Mickael, Fabre, Michel, Parmentier, Cécile, Frigui, Wafa, Simeone, Roxane, Boritsch, Eva C, Debrie, Anne-Sophie, Willery, Eve, Walker, Danielle, Quail, Michael A, Ma, Laurence, Bouchier, Christiane, Salvignol, Grégory, Sayes, Fadel, Cascioferro, Alessandro, Seemann, Torsten, Barbe, Valérie, Locht, Camille, Gutierrez, Maria-Cristina, Leclerc, Claude, Bentley, Stephen D, Stinear, Timothy P, Brisse, Sylvain, Médigue, Claudine, Parkhill, Julian, Cruveiller, Stéphane, Brosch, Roland

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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths von Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, Bingen, Edouard, Bonacorsi, Stéphane, Bouchier, Christiane, Bouvet, Odile, Calteau, Alexandra, Chiapello, Hélène, Clermont, Olivier, Cruveiller, Stéphane, Danchin, Antoine, Diard, Médéric, Dossat, Carole, Karoui, Meriem El, Frapy, Eric, Garry, Louis, Ghigo, Jean Marc, Gilles, Anne Marie, Johnson, James, Le Bouguénec, Chantal, Lescat, Mathilde, Mangenot, Sophie, Martinez-Jéhanne, Vanessa, Matic, Ivan, Nassif, Xavier, Oztas, Sophie, Petit, Marie Agnès, Pichon, Christophe, Rouy, Zoé, Ruf, Claude Saint, Schneider, Dominique, Tourret, Jérôme, Vacherie, Benoit, Vallenet, David, Médigue, Claudine, Rocha, Eduardo P C, Denamur, Erick

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Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia von Giraud, Eric, Moulin, Lionel, Vallenet, David, Barbe, Valérie, Cytryn, Eddie, Avarre, Jean-Christophe, Jaubert, Marianne, Simon, Damien, Cartieaux, Fabienne, Prin, Yves, Bena, Gilles, Hannibal, Laure, Fardoux, Joel, Kojadinovic, Mila, Vuillet, Laurie, Lajus, Aurélie, Cruveiller, Stéphane, Rouy, Zoe, Mangenot, Sophie, Segurens, Béatrice, Dossat, Carole, Franck, William L, Chang, Woo-Suk, Saunders, Elizabeth, Bruce, David, Richardson, Paul, Normand, Philippe, Dreyfus, Bernard, Pignol, David, Stacey, Gary, Emerich, David, Verméglio, André, Médigue, Claudine, Sadowsky, Michael

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The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food von Turpin, Williams, Weiman, Marion, Guyot, Jean-Pierre, Lajus, Aurélie, Cruveiller, Stéphane, Humblot, Christèle

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Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium von Barbe, Valérie, Vallenet, David, Fonknechten, Nuria, Kreimeyer, Annett, Oztas, Sophie, Labarre, Laurent, Cruveiller, Stéphane, Robert, Catherine, Duprat, Simone, Wincker, Patrick, Ornston, L. Nicholas, Weissenbach, Jean, Marlière, Philippe, Cohen, Georges N., Médigue, Claudine

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph von Gautreau, Guillaume, Bazin, Adelme, Gachet, Mathieu, Planel, Rémi, Burlot, Laura, Dubois, Mathieu, Perrin, Amandine, Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Matias, Catherine, Ambroise, Christophe, Rocha, Eduardo P C, Vallenet, David

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Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph von Gautreau, Guillaume, Bazin, Adelme, Gachet, Mathieu, Planel, Rémi, Burlot, Laura, Dubois, Mathieu, Perrin, Amandine, Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Matias, Catherine, Ambroise, Christophe, Rocha, Eduardo P C, Vallenet, David

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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes von Vallenet, David, Calteau, Alexandra, Cruveiller, Stéphane, Gachet, Mathieu, Lajus, Aurélie, Josso, Adrien, Mercier, Jonathan, Renaux, Alexandre, Rollin, Johan, Rouy, Zoe, Roche, David, Scarpelli, Claude, Médigue, Claudine

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Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids von Cheval, Justine, Muth, Erika, Gonzalez, Gaëlle, Coulpier, Muriel, Beurdeley, Pascale, Cruveiller, Stéphane, Eloit, Marc

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Conservation and diversity of the IrrE/DdrO‐controlled radiation response in radiation‐resistant Deinococcus bacteria von Blanchard, Laurence, Guérin, Philippe, Roche, David, Cruveiller, Stéphane, Pignol, David, Vallenet, David, Armengaud, Jean, Groot, Arjan

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Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources von Vuilleumier, Stéphane, Chistoserdova, Ludmila, Lee, Ming-Chun, Bringel, Françoise, Lajus, Aurélie, Zhou, Yang, Gourion, Benjamin, Barbe, Valérie, Chang, Jean, Cruveiller, Stéphane, Dossat, Carole, Gillett, Will, Gruffaz, Christelle, Haugen, Eric, Hourcade, Edith, Levy, Ruth, Mangenot, Sophie, Muller, Emilie, Nadalig, Thierry, Pagni, Marco, Penny, Christian, Peyraud, Rémi, Robinson, David G, Roche, David, Rouy, Zoé, Saenampechek, Channakhone, Salvignol, Grégory, Vallenet, David, Wu, Zaining, Marx, Christopher J, Vorholt, Julia A, Olson, Maynard V, Kaul, Rajinder, Weissenbach, Jean, Médigue, Claudine, Lidstrom, Mary E

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Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment von Maddamsetti, Rohan, Hatcher, Philip J, Cruveiller, Stéphane, Médigue, Claudine, Barrick, Jeffrey E, Lenski, Richard E

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Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 von Médigue, Claudine, Krin, Evelyne, Pascal, Géraldine, Barbe, Valérie, Bernsel, Andreas, Bertin, Philippe N, Cheung, Frankie, Cruveiller, Stéphane, D'Amico, Salvino, Duilio, Angela, Fang, Gang, Feller, Georges, Ho, Christine, Mangenot, Sophie, Marino, Gennaro, Nilsson, Johan, Parrilli, Ermenegilda, Rocha, Eduardo P C, Rouy, Zoé, Sekowska, Agnieszka, Tutino, Maria Luisa, Vallenet, David, von Heijne, Gunnar, Danchin, Antoine

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