A comprehensive estimation of country-level basic reproduction numbers R0 for COVID-19: Regime regression can automatically estimate the end of the exponential phase in epidemic da... von Spouge, John L.

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Estimating the basic reproduction number of a pathogen in a single host when only a single founder successfully infects von Patel, Vruj, Spouge, John L

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CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms von Pawlowski, Jan, Audic, Stéphane, Adl, Sina, Bass, David, Belbahri, Lassaâd, Berney, Cédric, Bowser, Samuel S, Cepicka, Ivan, Decelle, Johan, Dunthorn, Micah, Fiore-Donno, Anna Maria, Gile, Gillian H, Holzmann, Maria, Jahn, Regine, Jirků, Miloslav, Keeling, Patrick J, Kostka, Martin, Kudryavtsev, Alexander, Lara, Enrique, Lukeš, Julius, Mann, David G, Mitchell, Edward A D, Nitsche, Frank, Romeralo, Maria, Saunders, Gary W, Simpson, Alastair G B, Smirnov, Alexey V, Spouge, John L, Stern, Rowena F, Stoeck, Thorsten, Zimmermann, Jonas, Schindel, David, de Vargas, Colomban

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Structural prediction of RNA switches using conditional base-pair probabilities von Manzourolajdad, Amirhossein, Spouge, John L

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Estimating age-stratified transmission and reproduction numbers during the early exponential phase of an epidemic: A case study with COVID-19 data von Stanke, Zachary, Spouge, John L.

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Correction: Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera von Martín, María P, Daniëls, Pablo P, Erickson, David, Spouge, John L

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Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera von Martín, María P, Daniëls, Pablo P, Erickson, David, Spouge, John L

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A closed formula relevant to 'Theory of local k-mer selection with applications to long-read alignment' by Jim Shaw and Yun William Yu von Spouge, John L

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MultiDomainBenchmark: a multi-domain query and subject database suite von Carroll, Hyrum D, Spouge, John L, Gonzalez, Mileidy

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Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic von Manzourolajdad, Amirhossein, Gonzalez, Mileidy, Spouge, John L

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Hemolysis Pathways during Storage of Erythrocytes and Inter-Donor Variability in Erythrocyte Morphology von Melzak, Kathryn A., Spouge, John L., Boecker, Clemens, Kirschhöfer, Frank, Brenner-Weiss, Gerald, Bieback, Karen

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Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA von Tang, Kujin, Ren, Jie, Cronn, Richard, Erickson, David L, Milligan, Brook G, Parker-Forney, Meaghan, Spouge, John L, Sun, Fengzhu

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Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera von Suwannasai, Nuttika, Martín, María P, Phosri, Cherdchai, Sihanonth, Prakitsin, Whalley, Anthony J S, Spouge, John L

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A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups von Spouge, John L, Ziegelbauer, Joseph M, Gonzalez, Mileidy

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How to optimally sample a sequence for rapid analysis von Frith, Martin C, Shaw, Jim, Spouge, John L

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Discovery of Kaposi’s sarcoma herpesvirus-encoded circular RNAs and a human antiviral circular RNA von Tagawa, Takanobu, Gao, Shaojian, Koparde, Vishal N., Gonzalez, Mileidy, Spouge, John L., Serquiña, Anna P., Lurain, Kathryn, Ramaswami, Ramya, Uldrick, Thomas S., Yarchoan, Robert, Ziegelbauer, Joseph M.

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An accurate approximation for the expected site frequency spectrum in a Galton–Watson process under an infinite sites mutation model von Spouge, John L.

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Coalescent: an open-source and scalable framework for exact calculations in coalescent theory von Tewari, Susanta, Spouge, John L

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Coalescent: an open-science framework for importance sampling in coalescent theory von Tewari, Susanta, Spouge, John L

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DNA barcode for land plants von Hollingsworth, Peter M, Forrest, Laura L, Spouge, John L, Hajibabaei, Mehrdad, Ratnasingham, Sujeevan, van der Bank, Michelle, Chase, Mark W, Cowan, Robyn S, Erickson, David L, Fazekas, Aron J, Graham, Sean W, James, Karen E, Kim, Ki-Joong, Kress, W. John, Schneider, Harald, van AlphenStahl, Jonathan, Barrett, Spencer C.H, van den Berg, Cassio, Bogarin, Diego, Burgess, Kevin S, Cameron, Kenneth M, Carine, Mark, Chacón, Juliana, Clark, Alexandra, Clarkson, James J, Conrad, Ferozah, Devey, Dion S, Ford, Caroline S, Hedderson, Terry A.J, Hollingsworth, Michelle L, Husband, Brian C, Kelly, Laura J, Kesanakurti, Prasad R, Kim, Jung Sung, Kim, Young-Dong, Lahaye, Renaud, Lee, Hae-Lim, Long, David G, Madriñán, Santiago, Maurin, Olivier, Meusnier, Isabelle, Newmaster, Steven G, Park, Chong-Wook, Percy, Diana M, Petersen, Gitte, Richardson, James E, Salazar, Gerardo A, Savolainen, Vincent, Seberg, Ole, Wilkinson, Michael J, Yi, Dong-Keun, Little, Damon P

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