Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements von Schäffer, A A, Aravind, L, Madden, T L, Shavirin, S, Spouge, J L, Wolf, Y I, Koonin, E V, Altschul, S F

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AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes von Neuwald, A F, Aravind, L, Spouge, J L, Koonin, E V

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Finding functional sequence elements by multiple local alignment von Frith, Martin C., Hansen, Ulla, Spouge, John L., Weng, Zhiping

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Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences von Frith, Martin C., Spouge, John L., Hansen, Ulla, Weng, Zhiping

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Statistical analysis of over‐represented words in human promoter sequences von Mariño‐Ramírez, Leonardo, Spouge, John L., Kanga, Gavin C., Landsman, David

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Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes von Jordan, I. K.

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The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment von Sheetlin, Sergey, Park, Yonil, Spouge, John L.

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Alignments anchored on genomic landmarks can aid in the identification of regulatory elements von Tharakaraman, Kannan, Mariño-Ramírez, Leonardo, Sheetlin, Sergey, Landsman, David, Spouge, John L.

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Finite-size corrections to Poisson approximations in general renewal-success processes von Spouge, John L.

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Exact solutions for a diffusion-reaction process in one dimension von Spouge, JL

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Factors underlying spontaneous inactivation and susceptibility to neutralization of human immunodeficiency virus von Layne, Scott P., Merges, Michael J., Dembo, Micah, Spouge, John L., Conley, Shawn R., Moore, John P., Raina, Jawahar L., Renz, Herbert, Gelderblom, Hans R., Narat, Peter L.

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Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae von Wolfsberg, T G, Gabrielian, A E, Campbell, M J, Cho, R J, Spouge, J L, Landsman, D

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The correlation error and finite-size correction in an ungapped sequence alignment von Park, Yonil, Spouge, John L.

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Path reversal, islands, and the gapped alignment of random sequences von Spouge, John L.

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The efficient computation of position-specific match scores with the fast fourier transform von Rajasekaran, S, Jin, X, Spouge, J L

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Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins von Cornette, James L., Cease, Kemp B., Margalit, Hanah, Spouge, John L., Berzofsky, Jay A., DeLisi, Charles

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Prediction of immunodominant helper T cell antigenic sites from the primary sequence von Margalit, H, Spouge, JL, Cornette, JL, Cease, KB, Delisi, C, Berzofsky, JA

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Searching for Multiple Words in a Markov Sequence von Park, Yonil, Spouge, John L

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Finite-size corrections to Poisson approximations of rare events in renewal processes von Spouge, John L.

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Computation of the Gamma, Digamma, and Trigamma Functions von Spouge, John L.

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