Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes von Siepel, Adam, Bejerano, Gill, Pedersen, Jakob S, Hinrichs, Angie S, Hou, Minmei, Rosenbloom, Kate, Clawson, Hiram, Spieth, John, Hillier, Ladeana W, Richards, Stephen, Weinstock, George M, Wilson, Richard K, Gibbs, Richard A, Kent, W James, Miller, Webb, Haussler, David

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Methods and strategies for gene structure curation in WormBase von Williams, G W, Davis, P A, Rogers, A S, Bieri, T, Ozersky, P, Spieth, J

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Identification of Genes Subject to Positive Selection in Uropathogenic Strains of Escherichia coli: A Comparative Genomics Approach von Chen, Swaine L., Hung, Chia-Seui, Xu, Jian, Reigstad, Christopher S., Magrini, Vincent, Sabo, Aniko, Blasiar, Darin, Bieri, Tamberlyn, Meyer, Rekha R., Ozersky, Philip, Armstrong, Jon R., Fulton, Robert S., Latreille, J. Phillip, Spieth, John, Hooton, Thomas M., Mardis, Elaine R., Hultgren, Scott J., Gordon, Jeffrey I.

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WormBase 2012: more genomes, more data, new website von Yook, Karen, Harris, Todd W., Bieri, Tamberlyn, Cabunoc, Abigail, Chan, Juancarlos, Chen, Wen J., Davis, Paul, de la Cruz, Norie, Duong, Adrian, Fang, Ruihua, Ganesan, Uma, Grove, Christian, Howe, Kevin, Kadam, Snehalata, Kishore, Ranjana, Lee, Raymond, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nash, Bill, Ozersky, Philip, Paulini, Michael, Raciti, Daniela, Rangarajan, Arun, Schindelman, Gary, Shi, Xiaoqi, Schwarz, Erich M., Ann Tuli, Mary, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Hodgkin, Jonathan, Berriman, Matthew, Durbin, Richard, Kersey, Paul, Spieth, John, Stein, Lincoln, Sternberg, Paul W.

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Intercistronic Region Required for Polycistronic Pre-mRNA Processing in Caenorhabditis elegans von Huang, Tao, Kuersten, Scott, Deshpande, Atul M., Spieth, John, MacMorris, Margaret, Blumenthal, Thomas

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Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 von McClelland, Michael, Sanderson, Kenneth E, Spieth, John, Clifton, Sandra W, Latreille, Phil, Courtney, Laura, Porwollik, Steffen, Ali, Johar, Dante, Mike, Du, Feiyu, Hou, Shunfang, Layman, Dan, Leonard, Shawn, Nguyen, Christine, Scott, Kelsi, Holmes, Andrea, Grewal, Neenu, Mulvaney, Elizabeth, Ryan, Ellen, Sun, Hui, Florea, Liliana, Miller, Webb, Stoneking, Tamberlyn, Nhan, Michael, Waterston, Robert, Wilson, Richard K

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WormBase: network access to the genome and biology of Caenorhabditis elegans von Stein, L, Sternberg, P, Durbin, R, Thierry-Mieg, J, Spieth, J

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Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid von McClelland, Michael, Sanderson, Kenneth E, Clifton, Sandra W, Latreille, Phil, Porwollik, Steffen, Sabo, Aniko, Meyer, Rekha, Bieri, Tamberlyn, Ozersky, Phil, McLellan, Michael, Harkins, C Richard, Wang, Chunyan, Nguyen, Christine, Berghoff, Amy, Elliott, Glendoria, Kohlberg, Sara, Strong, Cindy, Du, Feiyu, Carter, Jason, Kremizki, Colin, Layman, Dan, Leonard, Shawn, Sun, Hui, Fulton, Lucinda, Nash, William, Miner, Tracie, Minx, Patrick, Delehaunty, Kim, Fronick, Catrina, Magrini, Vincent, Nhan, Michael, Warren, Wesley, Florea, Liliana, Spieth, John, Wilson, Richard K

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Insertion of part of an intron into the 5' untranslated region of a Caenorhabditis elegans gene converts it into a trans-spliced gene von CONRAD, R, THOMAS, J, SPIETH, J, BLUMENTHAL, T

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WormBase 2007 von Rogers, Anthony, Antoshechkin, Igor, Bieri, Tamberlyn, Blasiar, Darin, Bastiani, Carol, Canaran, Payan, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Fernandes, Jolene, Fiedler, Tristan J, Han, Michael, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, McKay, Sheldon, Müller, Hans-Michael, Nakamura, Cecilia, Ozersky, Philip, Petcherski, Andrei, Schindelman, Gary, Schwarz, Erich M, Spooner, Will, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Yook, Karen, Durbin, Richard, Stein, Lincoln D, Spieth, John, Sternberg, Paul W

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WormBase: a comprehensive data resource for Caenorhabditis biology and genomics von Chen, Nansheng, Harris, Todd W., Antoshechkin, Igor, Bastiani, Carol, Bieri, Tamberlyn, Blasiar, Darin, Bradnam, Keith, Canaran, Payan, Chan, Juancarlos, Chen, Chao-Kung, Chen, Wen J., Cunningham, Fiona, Davis, Paul, Kenny, Eimear, Kishore, Ranjana, Lawson, Daniel, Lee, Raymond, Muller, Hans-Michael, Nakamura, Cecilia, Pai, Shraddha, Ozersky, Philip, Petcherski, Andrei, Rogers, Anthony, Sabo, Aniko, Schwarz, Erich M., Van Auken, Kimberly, Wang, Qinghua, Durbin, Richard, Spieth, John, Sternberg, Paul W., Stein, Lincoln D.

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Conservation and Novelty in the Evolution of Cell Adhesion and Extracellular Matrix Genes von Hutter, Harald, Vogel, Bruce E., Plenefisch, John D., Norris, Carolyn R., Proenca, Rui B., Spieth, John, Guo, Chaobo, Mastwal, Surjeet, Zhu, Xiaoping, Scheel, Jochen, Hedgecock, Edward M.

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WormBase: a multi‐species resource for nematode biology and genomics von Harris, Todd W., Chen, Nansheng, Cunningham, Fiona, Tello‐Ruiz, Marcela, Antoshechkin, Igor, Bastiani, Carol, Bieri, Tamberlyn, Blasiar, Darin, Bradnam, Keith, Chan, Juancarlos, Chen, Chao‐Kung, Chen, Wen J., Davis, Paul, Kenny, Eimear, Kishore, Ranjana, Lawson, Daniel, Lee, Raymond, Muller, Hans‐Michael, Nakamura, Cecilia, Ozersky, Philip, Petcherski, Andrei, Rogers, Anthony, Sabo, Aniko, Schwarz, Erich M., Van Auken, Kimberly, Wang, Qinghua, Durbin, Richard, Spieth, John, Sternberg, Paul W., Stein, Lincoln D.

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elt-1, an embryonically expressed Caenorhabditis elegans gene homologous to the GATA transcription factor family von Spieth, J, Shim, Y H, Lea, K, Conrad, R, Blumenthal, T

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The Caenorhabditis elegans vitellogenin gene family includes a gene encoding a distantly related protein von SPIETH, J, BLUMENTHAL, T

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Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana von Stiekema, W, Harris, B, Ansorge, W, Weichselgartner, M, Mache, R, Müller, M, Delseny, M, Reichert, B, Perez-Alonso, M, Boutry, M, Vos, P, Zimmermann, W, Wedler, H, Robben, J, Vandenbussche, F, Braeken, M, Weltjens, I, Voet, M, Aert, R, Bothe, G, Holzer, E, Brandt, A, Peters, S, Dirkse, W, Mooijman, P, Rose, M, Hauf, J, Berneiser, S, Lamberth, S, Buysshaert, C, Villarroel, R, Van Montagu, M, Quail, M, Clark, L, Doggett, J, Kay, M, McLay, K, Pettett, A, Benes, V, Rechmann, S, Blöcker, H, Grimm, M, de Haan, M, Gabel, C, Fuchs, M, Fartmann, B, Dauner, D, Argiriou, A, Massenet, O, Quigley, F, Lecharny, A, Cooke, R, Berger, C, Bargues, M, Perez-Perez, A, Purnelle, B, Johnson, S, Tacon, D, Jesse, T, Scholler, P, Frishman, D, Haase, D, Stocker, S, Zaccaria, P, Wilson, R. K, de la Bastide, M, Gnoj, L, Schutz, K, Murray, J, Sheet, P, Abu-Threideh, J, Kalicki, J, Graves, T, Harmon, G, Edwards, J, Scott, K, Johnson, D, Minx, P, Bentley, D, Fulton, B, Miller, N, Greco, T, Dante, M, Pepin, K, Hillier, L, Nelson, J, Ryan, E, Geisel, C, Du, H, Ali, J, Drone, K, Zidanic, M, Lamar, B, Preston, R, Rodriguez, M, Granat, S, Shohdy, N, Hameed, A, Lodhi, M, Marra, M

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Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoter von MACMORRIS, M, BROVERMAN, S, GREENSPOON, S, LEA, K, MADEJ, C, BLUMENTHAL, T, SPIETH, J

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WormBase: a cross-species database for comparative genomics von Harris, Todd W., Lee, Raymond, Schwarz, Erich, Bradnam, Keith, Lawson, Daniel, Chen, Wen, Blasier, Darin, Kenny, Eimear, Cunningham, Fiona, Kishore, Ranjana, Chan, Juancarlos, Muller, Hans-Michael, Petcherski, Andrei, Thorisson, Gudmundur, Day, Allen, Bieri, Tamberlyn, Rogers, Anthony, Chen, Chao-Kung, Spieth, John, Sternberg, Paul, Durbin, Richard, Stein, Lincoln D.

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Analysis of the VPE sequences in the Caenorhabditis elegans vit-2 promoter with extrachromosomal tandem array-containing transgenic strains von MACMORRIS, M, SPIETH, J, MADEJ, C, LEA, K, BLUMENTHAL, T

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Operons in C. elegans: Polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions von Spieth, John, Brooke, Glenn, Kuersten, Scott, Lea, Kristi, Blumenthal, Thomas

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