Next-generation sequencing: A new avenue to understand viral RNA–protein interactions von Zhou, Yiyang, Sotcheff, Stephanea L., Routh, Andrew L.

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Understanding Flavivirus Capsid Protein Functions: The Tip of the Iceberg von Sotcheff, Stephanea, Routh, Andrew

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Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa von Wang, Shiyi, Sotcheff, Stephanea L, Gallardo, Christian M, Jaworski, Elizabeth, Torbett, Bruce E, Routh, Andrew L

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Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants von Jaworski, Elizabeth, Langsjoen, Rose M, Mitchell, Brooke, Judy, Barbara, Newman, Patrick, Plante, Jessica A, Plante, Kenneth S, Miller, Aaron L, Zhou, Yiyang, Swetnam, Daniele, Sotcheff, Stephanea, Morris, Victoria, Saada, Nehad, Machado, Rafael Rg, McConnell, Allan, Widen, Steven G, Thompson, Jill, Dong, Jianli, Ren, Ping, Pyles, Rick B, Ksiazek, Thomas G, Menachery, Vineet D, Weaver, Scott C, Routh, Andrew L

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Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells von Sotcheff, Stephanea L, Chen, John Yun-Chung, Elrod, Nathan, Cao, Jun, Jaworski, Elizabeth, Kuyumcu-Martinez, Mugé N, Shi, Pei-Yong, Routh, Andrew L

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SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3 von Schindewolf, Craig, Lokugamage, Kumari, Vu, Michelle N, Johnson, Bryan A, Scharton, Dionna, Plante, Jessica A, Kalveram, Birte, Crocquet-Valdes, Patricia A, Sotcheff, Stephanea, Jaworski, Elizabeth, Alvarado, Rojelio E, Debbink, Kari, Daugherty, Matthew D, Weaver, Scott C, Routh, Andrew L, Walker, David H, Plante, Kenneth S, Menachery, Vineet D

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QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis von Vu, Michelle N, Lokugamage, Kumari G, Plante, Jessica A, Scharton, Dionna, Bailey, Aaron O, Sotcheff, Stephanea, Swetnam, Daniele M, Johnson, Bryan A, Schindewolf, Craig, Alvarado, R Elias, Crocquet-Valdes, Patricia A, Debbink, Kari, Weaver, Scott C, Walker, David H, Russell, William K, Routh, Andrew L, Plante, Kenneth S, Menachery, Vineet D

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ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids von Sotcheff, Stephanea, Zhou, Yiyang, Yeung, Jason, Sun, Yan, Johnson, John E, Torbett, Bruce E, Routh, Andrew L

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Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants von Jaworski, Elizabeth, Langsjoen, Rose M., Mitchell, Brooke, Judy, Barbara, Newman, Patrick, Plante, Jessica A., Plante, Kenneth S., Miller, Aaron L., Zhou, Yiyang, Swetnam, Daniele, Sotcheff, Stephanea, Morris, Victoria, Saada, Nehad, Machado, Rafael R. G., McConnell, Allan, Widen, Steven G., Thompson, Jill, Dong, Jianli, Ren, Ping, Pyles, Rick B., Ksiazek, Thomas G., Menachery, Vineet D., Weaver, Scott C., Routh, Andrew L.

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Supporting data for "ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids" von Sotcheff Stephanea, Yiyang, Zhou, Yeung Jason, Yan, Sun, John, Johnson E, Bruce, Torbett E, Andrew, Routh L

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