Electrostatic Complementarities of Glioblastoma-Resident T-Cell Receptors and Cancer Testis Antigens Linked to Poor Outcomes and High Levels of Sphingosine Kinase-2 Expression von Arias, Miguel A, Cios, Konrad J, Kacsoh, Dorottya B, Montgomery, Bailey E, Song, Joanna J, Patel, Anishaa R, Chobrutskiy, Andrea, Chobrutskiy, Boris I, Blanck, George

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An optimized reporter of the transcription factor hypoxia-inducible factor 1α reveals complex HIF-1α activation dynamics in single cells von Jeknić, Stevan, Kudo, Takamasa, Song, Joanna J., Covert, Markus W.

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Utility of Specimens Positive for Neisseria gonorrhoeae by the Aptima Combo 2 Assay for Assessment of Strain Diversity and Antibiotic Resistance von Pabbaraju, Kanti, Wong, Sallene, Song, Joanna J, Singh, Ameeta E, Read, Ron, Drews, Steven J

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TRB CDR3 chemical complementarity with HBV epitopes correlates with increased hepatocellular carcinoma, disease‐free survival von Song, Joanna J., Chobrutskiy, Andrea, Chobrutskiy, Boris I., Cios, Konrad J., Huda, Taha I., Eakins, Rachel A., Diaz, Michael J., Blanck, George

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Survival Distinctions for Cases Representing Immunologically Cold Tumors via Intrinsic Disorder Assessments for Blood-Sourced TRB Variable Regions von Sahoo, Arpan, Gozlan, Etienne C, Song, Joanna J, Angelakakis, George, Yeagley, Michelle, Chobrutskiy, Boris I, Huda, Taha I, Blanck, George

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Blood-based T cell receptor anti-viral CDR3s are associated with worse overall survival for neuroblastoma von Kacsoh, Dorottya B., Diaz, Michael J., Gozlan, Etienne C., Sahoo, Arpan, Song, Joanna J., Yeagley, Michelle, Chobrutskiy, Andrea, Chobrutskiy, Boris I., Blanck, George

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Stratification of Wilms tumor patients using physicochemical properties of the adaptive immune receptor polypeptides, IGL and TRG von Adams, David P., Gozlan, Etienne C., Medikonda, Nikhila, Song, Joanna J., Sahoo, Arpan, Yeagley, Michelle, Blanck, George

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Chemical Complementarity of Tumor Resident, Adaptive Immune Receptor CDR3s and Previously Defined Hepatitis C Virus Epitopes Correlates with Improved Outcomes in Hepatocellular Car... von Song, Joanna J, Chobrutskiy, Andrea, Chobrutskiy, Boris I, Cios, Konrad J, Huda, Taha I, Eakins, Rachel A, Diaz, Michael J, Blanck, George

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Predicting Unplanned 7-day Intensive Care Unit Readmissions with Machine Learning Models for Improved Discharge Risk Assessment von Shi, Katherine, Ho, Vy, Song, Joanna J, Bechler, Katelyn, H Chen, Jonathan

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Adaptive Immune Receptor Distinctions Along the Colorectal Polyp-Tumor Timelapse von Huda, Taha I., Nguyen, Diep, Sahoo, Arpan, Song, Joanna J., Gutierrez, Alexander F., Chobrutskiy, Boris I., Blanck, George

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Chemical Complementarity of Blood-Sourced, Breast Cancer-Related TCR CDR3s and the CMV UL29 and IE1 Antigens is Associated with Worse Overall Survival von Neerumalla, Pooja, Jain, Rahul, Aboujaoude, Michael T, Hudock, Tabitha R, Song, Joanna J, Cao, Bryan H, Chobrutskiy, Andrea, Chobrutskiy, Boris I, Blanck, George

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TRB CDR3-cancer testis antigen chemical complementarity scoring for identifying productive immune responses in renal cell carcinoma von Hudock, Tabitha R, Barker, Vayda R, Manley, Brandon J, Chobrutskiy, Andrea, Chobrutskiy, Boris I, Diaz, Michael J, Song, Joanna J, Blanck, George

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High percentage of blood-based T-cell receptor gamma V9-JP recombinations associated with amyotrophic lateral sclerosis: extensive retention of the JP KKIK amino acid motif von Blanck, George, Huda, Taha I., Cios, Konrad J., Angelakakis, George, Song, Joanna J.

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Worse Wilms’ Tumor Outcomes Associated With Chemical Complementarity for Multiple T-Cell Receptor CDR3-CMV Epitope Pairs von RIGBY, KASEY L., DIAZ, MICHAEL J., GOZLAN, ETIENNE C., KACSOH, DOROTTYA B., SONG, JOANNA J., HUDOCK, TABITHA R., CHOBRUTSKIY, ANDREA, CHOBRUTSKIY, BORIS I., BLANCK, GEORGE

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DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors von Mazor, Tali, Pankov, Aleksandr, Johnson, Brett E., Hong, Chibo, Hamilton, Emily G., Bell, Robert J.A., Smirnov, Ivan V., Reis, Gerald F., Phillips, Joanna J., Barnes, Michael J., Idbaih, Ahmed, Alentorn, Agusti, Kloezeman, Jenneke J., Lamfers, Martine L.M., Bollen, Andrew W., Taylor, Barry S., Molinaro, Annette M., Olshen, Adam B., Chang, Susan M., Song, Jun S., Costello, Joseph F.

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Toxoplasma gondii virulence factor ROP1 reduces parasite susceptibility to murine and human innate immune restriction von Butterworth, Simon, Torelli, Francesca, Lockyer, Eloise J, Wagener, Jeanette, Song, Ok-Ryul, Broncel, Malgorzata, Russell, Matt R G, Moreira-Souza, Aline Cristina A, Young, Joanna C, Treeck, Moritz

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Atg16l1 is Required for Autophagy in Intestinal Epithelial Cells and Protection of Mice From Salmonella Infection von Conway, Kara L, Kuballa, Petric, Song, Joo–Hye, Patel, Khushbu K, Castoreno, Adam B, Yilmaz, Omer H, Jijon, Humberto B, Zhang, Mei, Aldrich, Leslie N, Villablanca, Eduardo J, Peloquin, Joanna M, Goel, Gautam, Lee, In–Ah, Mizoguchi, Emiko, Shi, Hai Ning, Bhan, Atul K, Shaw, Stanley Y, Schreiber, Stuart L, Virgin, Herbert W, Shamji, Alykhan F, Stappenbeck, Thaddeus S, Reinecker, Hans–Christian, Xavier, Ramnik J

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DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation von Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus

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Phase 2 study of the focal adhesion kinase inhibitor defactinib (VS-6063) in previously treated advanced KRAS mutant non-small cell lung cancer von Gerber, David E., Camidge, D. Ross, Morgensztern, Daniel, Cetnar, Jeremey, Kelly, Ronan J., Ramalingam, Suresh S., Spigel, David R., Jeong, Woondong, Scaglioni, Pier P., Zhang, Song, Li, Marilyn, Weaver, David T., Vaikus, Louis, Keegan, Mitchell, Horobin, Joanna C., Burns, Timothy F.

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Correlates of protection against symptomatic and asymptomatic SARS-CoV-2 infection von Feng, Shuo, Phillips, Daniel J., White, Thomas, Sayal, Homesh, Aley, Parvinder K., Bibi, Sagida, Dold, Christina, Fuskova, Michelle, Gilbert, Sarah C., Hirsch, Ian, Humphries, Holly E., Jepson, Brett, Kelly, Elizabeth J., Plested, Emma, Shoemaker, Kathryn, Thomas, Kelly M., Vekemans, Johan, Villafana, Tonya L., Lambe, Teresa, Pollard, Andrew J., Voysey, Merryn

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