Co-expression patterns of microglia markers Iba1, TMEM119 and P2RY12 in Alzheimer's disease von Kenkhuis, Boyd, Somarakis, Antonios, Kleindouwel, Lynn R.T., van Roon-Mom, Willeke M.C., Höllt, Thomas, van der Weerd, Louise

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Iron loading is a prominent feature of activated microglia in Alzheimer's disease patients von Kenkhuis, Boyd, Somarakis, Antonios, de Haan, Lorraine, Dzyubachyk, Oleh, IJsselsteijn, Marieke E, de Miranda, Noel F C C, Lelieveldt, Boudewijn P F, Dijkstra, Jouke, van Roon-Mom, Willeke M C, Höllt, Thomas, van der Weerd, Louise

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Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry von Li, Na, van Unen, Vincent, Guo, Nannan, Abdelaal, Tamim, Somarakis, Antonios, Eggermont, Jeroen, Mahfouz, Ahmed, Chuva de Sousa Lopes, Susana M, Lelieveldt, Boudewijn P F, Koning, Frits

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Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival von Abdulrahman, Ziena, Santegoets, Saskia J, Sturm, Gregor, Charoentong, Pornpimol, Ijsselsteijn, Marieke E, Somarakis, Antonios, Höllt, Thomas, Finotello, Francesca, Trajanoski, Zlatko, van Egmond, Sylvia L, Mustafa, Dana A M, Welters, Marij J P, de Miranda, Noel F C C, van der Burg, Sjoerd H

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Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer von Plattner, Christina, Lamberti, Giorgia, Blattmann, Peter, Kirchmair, Alexander, Rieder, Dietmar, Loncova, Zuzana, Sturm, Gregor, Scheidl, Stefan, Ijsselsteijn, Marieke, Fotakis, Georgios, Noureen, Asma, Lisandrelli, Rebecca, Böck, Nina, Nemati, Niloofar, Krogsdam, Anne, Daum, Sophia, Finotello, Francesca, Somarakis, Antonios, Schäfer, Alexander, Wilflingseder, Doris, Gonzalez Acera, Miguel, Öfner, Dietmar, Huber, Lukas A., Clevers, Hans, Becker, Christoph, Farin, Henner F., Greten, Florian R., Aebersold, Ruedi, de Miranda, Noel F.C.C., Trajanoski, Zlatko

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Immune-based biomarker accurately predicts response to imiquimod immunotherapy in cervical high-grade squamous intraepithelial lesions von Abdulrahman, Ziena, Hendriks, Natasja, J Kruse, Arnold, Somarakis, Antonios, J M van de Sande, Anna, J van Beekhuizen, Heleen, M J Piek, Jurgen, de Miranda, Noel F C C, Kooreman, Loes F S, F M Slangen, Brigitte, van der Burg, Sjoerd H, de Vos van Steenwijk, Peggy J, van Esch, Edith M G

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35 Chemokine-driven spatial organization of immune cell microaggregates marks oropharyngeal squamous cell carcinomas containing tumor-specific T cells von Abdulrahman, Ziena, Santegoets, Saskia, Sturm, Gregor, Charoentong, Pornpimol, Ijsselsteijn, Marieke, Somarakis, Antonios, Höllt, Thomas, Finotello, Francesca, Trajanoski, Zlatko, Egmond, Sylvia van, Mustafa, Dana, Welters, Marij, Miranda, Noel de, Burg, Sjoerd van der

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ImaCytE: Visual Exploration of Cellular Micro-Environments for Imaging Mass Cytometry Data von Somarakis, Antonios, Van Unen, Vincent, Koning, Frits, Lelieveldt, Boudewijn, Hollt, Thomas

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Eleven grand challenges in single-cell data science von Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J, Hicks, Stephanie C, Robinson, Mark D, Vallejos, Catalina A, Campbell, Kieran R, Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E, Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M, Khatri, Indu, Kielbasa, Szymon M, Korbel, Jan O, Kozlov, Alexey M, Kuo, Tzu-Hao, Lelieveldt, Boudewijn P F, Mandoiu, Ion I, Marioni, John C, Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Rączkowska, Alicja, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J, Yang, Huan, Zelikovsky, Alex, McHardy, Alice C, Raphael, Benjamin J, Shah, Sohrab P, Schönhuth, Alexander

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Semi‐automated background removal limits data loss and normalizes imaging mass cytometry data von Ijsselsteijn, Marieke E., Somarakis, Antonios, Lelieveldt, Boudewijn P. F., Höllt, Thomas, Miranda, Noel F. C. C.

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Visual cohort comparison for spatial single-cell omics-data von Somarakis, Antonios, Ijsselsteijn, Marieke E., Luk, Sietse J., Kenkhuis, Boyd, de Miranda, Noel F.C.C., Lelieveldt, Boudewijn P.F., Hollt, Thomas

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VISTA Expression on Cancer-Associated Endothelium Selectively Prevents T-cell Extravasation von Luk, Sietse J., Schoppmeyer, Rouven, Ijsselsteijn, Marieke E., Somarakis, Antonios, Acem, Ibtissam, Remst, Dennis F.G., Cox, Daan T., van Bergen, Cornelis A.M., Briaire-de Bruijn, Inge, Grönloh, Max L.B., van der Meer, Werner J., Hawinkels, Lukas J.A.C., Koning, Roman I., Bos, Erik, Bovée, Judith V.M.G., de Miranda, Noel F.C.C., Szuhai, Karoly, van Buul, Jaap D., Falkenburg, J.H. Frederik, Heemskerk, Mirjam H.M.

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Visual cohort comparison for spatial single-cell omics-data von Somarakis, Antonios, Ijsselsteijn, Marieke E, Luk, Sietse J, Boyd Kenkhuis, Noel F C C de Miranda, Boudewijn P F Lelieveldt, Höllt, Thomas

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Eleven grand challenges in single-cell data science von Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J, Hicks, Stephanie C, Robinson, Mark D, Vallejos, Catalina A, Campbell, Kieran R, Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E, Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M, Khatri, Indu, Kielbasa, Szymon M, Korbel, Jan O, Kozlov, Alexey M, Kuo, Tzu-Hao, Lelieveldt, Boudewijn P F, Mandoiu, Ion I, Marioni, John C, Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Raczkowski, Lukasz, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J, Yang, Huan, Zelikovsky, Alex, McHardy, Alice C, Raphael, Benjamin J, Shah, Sohrab P, Schönhuth, Alexander

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Eleven grand challenges in single-cell data science von Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J, Hicks, Stephanie C, Robinson, Mark D, Vallejos, Catalina A, Campbell, Kieran R, Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E, Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M, Khatri, Indu, Kielbasa, Szymon M, Korbel, Jan O, Kozlov, Alexey M, Kuo, Tzu-Hao, Lelieveldt, Boudewijn P F, Mandoiu, Ion I, Marioni, John C, Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Raczkowski, Lukasz, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J, Yang, Huan, Zelikovsky, Alex, McHardy, Alice C, Raphael, Benjamin J, Shah, Sohrab P, Schönhuth, Alexander

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Eleven grand challenges in single-cell data science von Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J, Hicks, Stephanie C, Robinson, Mark D, Vallejos, Catalina A, Campbell, Kieran R, Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E, Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M, Khatri, Indu, Kielbasa, Szymon M, Korbel, Jan O, Kozlov, Alexey M, Kuo, Tzu-Hao, Lelieveldt, Boudewijn PF, Mandoiu, Ion I, Marioni, John C, Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Rączkowska, Alicja, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J, Yang, Huan, Zelikovsky, Alex, McHardy, Alice C, Raphael, Benjamin J, Shah, Sohrab P, Schönhuth, Alexander

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Eleven grand challenges in single-cell data science von Lähnemann, David, Köster, Johannes, Szczurek, Ewa, McCarthy, Davis J, Hicks, Stephanie C, Robinson, Mark D, Vallejos, Catalina A, Campbell, Kieran R, Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, Barbanson, Buys de, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E, Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M, Khatri, Indu, Kielbasa, Szymon M, Korbel, Jan O, Kozlov, Alexey M, Kuo, Tzu-Hao, Lelieveldt, Boudewijn P.F, Mandoiu, Ion I, Marioni, John C, Marschall, Tobias, Mölder, Felix, Niknejad, Amir, Raczkowski, Lukasz, Reinders, Marcel, Ridder, Jeroen de, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J, Yang, Huan, Zelikovsky, Alex, McHardy, Alice C, Raphael, Benjamin J, Shah, Sohrab P, Schönhuth, Alexander

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Functional precision profiling reveals non-mutational rewiring of kinase signaling networks in colorectal cancer von Plattner Christina, Lamberti Giorgia, Blattmann Peter, Kirchmair Alexander, Rieder Dietmar, Loncova Zuzana, Sturm Gregor, Scheidl Stefan, Ijsselsteijn Marieke, Fotakis Georgios, Noureen Asma, Lisandrelli Rebecca, Böck Nina, Nemati Niloofar, Krogsdam Anne, Daum Sophia, Finotello Francesca, Somarakis Antonios, Schäfer Alexander, Wilflingseder Doris, Gonzalez Acera Miguel, Öfner-Velano Dietmar, Huber Lukas, A., Clevers Hans, Becker Christoph, Farin Henner, F., Greten Florian, R., Aebersold Ruedi, Da Cunha Carvalho De Miranda Noel Filipe, Trajanoski Zlatko

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