RNA velocity—current challenges and future perspectives von Bergen, Volker, Soldatov, Ruslan A, Kharchenko, Peter V, Theis, Fabian J

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Cell segmentation in imaging-based spatial transcriptomics von Petukhov, Viktor, Xu, Rosalind J., Soldatov, Ruslan A., Cadinu, Paolo, Khodosevich, Konstantin, Moffitt, Jeffrey R., Kharchenko, Peter V.

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Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth von Krivanek, Jan, Soldatov, Ruslan A., Kastriti, Maria Eleni, Chontorotzea, Tatiana, Herdina, Anna Nele, Petersen, Julian, Szarowska, Bara, Landova, Marie, Matejova, Veronika Kovar, Holla, Lydie Izakovicova, Kuchler, Ulrike, Zdrilic, Ivana Vidovic, Vijaykumar, Anushree, Balic, Anamaria, Marangoni, Pauline, Klein, Ophir D., Neves, Vitor C. M., Yianni, Val, Sharpe, Paul T., Harkany, Tibor, Metscher, Brian D., Bajénoff, Marc, Mina, Mina, Fried, Kaj, Kharchenko, Peter V., Adameyko, Igor

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APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication von Seplyarskiy, Vladimir B, Soldatov, Ruslan A, Popadin, Konstantin Y, Antonarakis, Stylianos E, Bazykin, Georgii A, Nikolaev, Sergey I

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Evolution of Local Mutation Rate and Its Determinants von Terekhanova, Nadezhda V., Seplyarskiy, Vladimir B., Soldatov, Ruslan A., Bazykin, Georgii A.

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Polymerase ζ Activity Is Linked to Replication Timing in Humans: Evidence from Mutational Signatures von Seplyarskiy, Vladimir B., Bazykin, Georgii A., Soldatov, Ruslan A.

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RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments von Soldatov, Ruslan A, Vinogradova, Svetlana V, Mironov, Andrey A

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Differential processing of small RNAs during endoplasmic reticulum stress von Mesitov, Mikhail V., Soldatov, Ruslan A., Zaichenko, Danila M., Malakho, Sophie G., Klementyeva, Tatyana S., Sokolovskaya, Alisa A., Kubatiev, Aslan A., Mironov, Andrey A., Moskovtsev, Aleksey A.

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Probing-directed identification of novel structured RNAs von Vinogradova, Svetlana V., Sutormin, Roman A., Mironov, Andrey A., Soldatov, Ruslan A.

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scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data von Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor

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RNA velocity of single cells von La Manno, Gioele, Soldatov, Ruslan, Zeisel, Amit, Braun, Emelie, Hochgerner, Hannah, Petukhov, Viktor, Lidschreiber, Katja, Kastriti, Maria E., Lönnerberg, Peter, Furlan, Alessandro, Fan, Jean, Borm, Lars E., Liu, Zehua, van Bruggen, David, Guo, Jimin, He, Xiaoling, Barker, Roger, Sundström, Erik, Castelo-Branco, Gonçalo, Cramer, Patrick, Adameyko, Igor, Linnarsson, Sten, Kharchenko, Peter V.

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Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes von Gao, Teng, Soldatov, Ruslan, Sarkar, Hirak, Kurkiewicz, Adam, Biederstedt, Evan, Loh, Po-Ru, Kharchenko, Peter V.

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Spatiotemporal structure of cell fate decisions in murine neural crest von Soldatov, Ruslan, Kaucka, Marketa, Kastriti, Maria Eleni, Petersen, Julian, Chontorotzea, Tatiana, Englmaier, Lukas, Akkuratova, Natalia, Yang, Yunshi, Häring, Martin, Dyachuk, Viacheslav, Bock, Christoph, Farlik, Matthias, Piacentino, Michael L., Boismoreau, Franck, Hilscher, Markus M., Yokota, Chika, Qian, Xiaoyan, Nilsson, Mats, Bronner, Marianne E., Croci, Laura, Hsiao, Wen-Yu, Guertin, David A., Brunet, Jean-Francois, Consalez, Gian Giacomo, Ernfors, Patrik, Fried, Kaj, Kharchenko, Peter V., Adameyko, Igor

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Genome-Wide Mapping of R-Loops in Single Cells Reveals Cell-Type Specific Roles for R-Loops in Hematopoietic Cell Identity von Lu, Bin, Zhang, Pu, Chen, Sisi, Benbarche, Salima, Castro, Cynthia, Fox, Nina, Abubakar, Mohammad, Biswas, Jeetayu, Soldatov, Ruslan, Koche, Richard, Abdel-Wahab, Omar

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Abstract 2456: Transcriptional signatures of stem cell phenotypes in normal and clonal hematopoiesis von Soldatov, Ruslan, Schiroli, Giulia, Kharchenko, Peter, Scadden, David

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Population sequencing data reveal a compendium of mutational processes in the human germ line von Seplyarskiy, Vladimir B, Soldatov, Ruslan A, Koch, Evan, McGinty, Ryan J, Goldmann, Jakob M, Hernandez, Ryan D, Barnes, Kathleen, Correa, Adolfo, Burchard, Esteban G, Ellinor, Patrick T, McGarvey, Stephen T, Mitchell, Braxton D, Vasan, Ramachandran S, Redline, Susan, Silverman, Edwin, Weiss, Scott T, Arnett, Donna K, Blangero, John, Boerwinkle, Eric, He, Jiang, Montgomery, Courtney, Rao, D C, Rotter, Jerome I, Taylor, Kent D, Brody, Jennifer A, Chen, Yii-Der Ida, de las Fuentes, Lisa, Hwu, Chii-Min, Rich, Stephen S, Manichaikul, Ani W, Mychaleckyj, Josyf C, Palmer, Nicholette D, Smith, Jennifer A, Kardia, Sharon L R, Peyser, Patricia A, Bielak, Lawrence F, O'Connor, Timothy D, Emery, Leslie S, Gilissen, Christian, Wong, Wendy S W, Kharchenko, Peter V, Sunyaev, Shamil

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Polymerase [Zeta] Activity Is Linked to Replication Timing in Humans: Evidence from Mutational Signatures von Seplyarskiy, Vladimir B, Bazykin, Georgii A, Soldatov, Ruslan A

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Population sequencing data reveal a compendium of mutational processes in human germline von Seplyarskiy, Vladimir B, Soldatov, Ruslan A, Koch, Evan, McGinty, Ryan J, Goldmann, Jakob M, Hernandez, Ryan D, Barnes, Kathleen, Correa, Adolfo, Burchard, Esteban G, Ellinor, Patrick T, McGarvey, Stephen T, Mitchell, Braxton D, Vasan, Ramachandran S, Redline, Susan, Silverman, Edwin, Weiss, Scott T, Arnett, Donna K, Blangero, John, Boerwinkle, Eric, He, Jiang, Montgomery, Courtney, Rao, D C, Rotter, Jerome I, Taylor, Kent D, Brody, Jennifer A, Chen, Yii-Der Ida, de Las Fuentes, Lisa, Hwu, Chii-Min, Rich, Stephen S, Manichaikul, Ani W, Mychaleckyj, Josyf C, Palmer, Nicholette D, Smith, Jennifer A, Kardia, Sharon L R, Peyser, Patricia A, Bielak, Lawrence F, O'Connor, Timothy D, Emery, Leslie S, Gilissen, Christian, Wong, Wendy S W, Kharchenko, Peter V, Sunyaev, Shamil

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MERFISH measurements in the mouse ileum von Moffitt, Jeffrey, Xu, Rosalind, Kharchenko, Peter, Petukhov, Viktor, Cadinu, Paolo, Soldatov, Ruslan, Khodosevich, Konstantin

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RNA velocity of single cells von La Manno, Gioele, Soldatov, Ruslan, Zeisel, Amit, Braun, Emelie, Hochgerner, Hannah, Petukhov, Viktor, Lidschreiber, Katja

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