Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization von Zhao, Zhengqiao, Sokhansanj, Bahrad A, Malhotra, Charvi, Zheng, Kitty, Rosen, Gail L

Volltext

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network von Zhao, Zhengqiao, Woloszynek, Stephen, Agbavor, Felix, Mell, Joshua Chang, Sokhansanj, Bahrad A, Rosen, Gail L

Volltext

Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights von ValizadehAslani, Taha, Zhao, Zhengqiao, Sokhansanj, Bahrad A, Rosen, Gail L

Volltext

Interpretable and Predictive Deep Neural Network Modeling of the SARS-CoV-2 Spike Protein Sequence to Predict COVID-19 Disease Severity von Sokhansanj, Bahrad A, Zhao, Zhengqiao, Rosen, Gail L

Volltext

Complet+: a computationally scalable method to improve completeness of large-scale protein sequence clustering von Nguyen, Rachel, Sokhansanj, Bahrad A, Polikar, Robi, Rosen, Gail L

Volltext

Predicting Institution Outcomes for Inter Partes Review (IPR) Proceedings at the United States Patent Trial & Appeal Board by Deep Learning of Patent Owner Preliminary Response Bri... von Sokhansanj, Bahrad A., Rosen, Gail L.

Volltext

Mapping Data to Deep Understanding: Making the Most of the Deluge of SARS-CoV-2 Genome Sequences von Sokhansanj, Bahrad A, Rosen, Gail L

Volltext

Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening von Chandraghatgi, Rohan, Ji, Hai-Feng, Rosen, Gail L., Sokhansanj, Bahrad A.

Volltext

Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning von Sokhansanj, Bahrad A., Rosen, Gail L.

Volltext

Temporal Global Changes in Gene Expression during Temperature Transition in Yersinia pestis von MOTIN, Vladimir L, GEORGESCU, Anca M, ELLIOTT, Jeffrey M, KEGELMEYER, Laura M, WYROBEK, Andrew J, SLEZAK, Thomas R, BRUBAKER, Robert R, GARCIA, Emilio, FITCH, Joseph P, GU, Pauline P, NELSON, David O, MABERY, Shalini L, GARNHAM, Janine B, SOKHANSANJ, Bahrad A, OTT, Linda L, COLEMAN, Matthew A

Volltext

Fragment databases from screened ligands for drug discovery (FDSL-DD) von Wilson, Jerica, Sokhansanj, Bahrad A, Chong, Wei Chuen, Chandraghatgi, Rohan, Rosen, Gail L, Ji, Hai-Feng

Volltext

Accelerated search for biomolecular network models to interpret high-throughput experimental data von Datta, Suman, Sokhansanj, Bahrad A

Volltext

Estimating the Effect of Human Base Excision Repair Protein Variants on the Repair of Oxidative DNA Base Damage von SOKHANSANJ, Bahrad A, WILSON, David M

Volltext

Genetic Variability of Yersinia pestis Isolates as Predicted by PCR-Based IS100 Genotyping and Analysis of Structural Genes Encoding Glycerol-3-Phosphate Dehydrogenase (glpD) von Motin, Vladimir L, Georgescu, Anca M, Elliott, Jeffrey M, Hu, Ping, Worsham, Patricia L, Ott, Linda L, Slezak, Tomas R, Sokhansanj, Bahrad A, Regala, Warren M, Brubaker, Robert R, Garcia, Emilio

Volltext

Discovering the Unknown : Improving Detection of Novel Species and Genera from Short Reads von Rosen, Gail L., Polikar, Robi, Caseiro, Diamantino A., Essinger, Steven D., Sokhansanj, Bahrad A.

Volltext

Systems approaches to the networks of aging von Kriete, Andres, Sokhansanj, Bahrad A, Coppock, Donald L, West, Geoffrey B

Volltext

Signal Processing for Metagenomics: Extracting Information from the Soup von Rosen, Gail L, Sokhansanj, Bahrad A, Polikar, Robi, Bruns, Mary Ann, Russell, Jacob, Garbarine, Elaine, Essinger, Steve, Yok, Non

Volltext

Integrated modeling methodology for microtubule dynamics and Taxol kinetics with experimentally identifiable parameters von Zhao, He, Sokhansanj, Bahrad A

Volltext

A quantitative model of human DNA base excision repair. I. mechanistic insights von Sokhansanj, Bahrad A., Rodrigue, Garry R., Fitch, J. Patrick, III, David M. Wilson

Volltext

Mining, Modeling, and Evaluation of Subnetworks From Large Biomolecular Networks and Its Comparison Study von Xiaohua Hu, Ng, M., Fang-Xiang Wu, Sokhansanj, B.A.

Volltext