New tools for the analysis and validation of cryo‐EM maps and atomic models von Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre

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Polder maps: improving OMIT maps by excluding bulk solvent von Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.

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Automated map sharpening by maximization of detail and connectivity von Terwilliger, Thomas C., Sobolev, Oleg V., Afonine, Pavel V., Adams, Paul D.

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A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps von Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.

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FEM: feature-enhanced map von Afonine, Pavel V., Moriarty, Nigel W., Mustyakimov, Marat, Sobolev, Oleg V., Terwilliger, Thomas C., Turk, Dusan, Urzhumtsev, Alexandre, Adams, Paul D.

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Cryo‐EM map interpretation and protein model‐building using iterative map segmentation von Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.

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Cryo_fit: Democratization of flexible fitting for cryo-EM von Kim, Doo Nam, Moriarty, Nigel W., Kirmizialtin, Serdal, Afonine, Pavel V., Poon, Billy, Sobolev, Oleg V., Adams, Paul D., Sanbonmatsu, Karissa

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Real‐space refinement in PHENIX for cryo‐EM and crystallography von Afonine, Pavel V., Poon, Billy K., Read, Randy J., Sobolev, Oleg V., Terwilliger, Thomas C., Urzhumtsev, Alexandre, Adams, Paul D.

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A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry von Sobolev, Oleg V., Afonine, Pavel V., Moriarty, Nigel W., Hekkelman, Maarten L., Joosten, Robbie P., Perrakis, Anastassis, Adams, Paul D.

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Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix von Liebschner, Dorothee, Afonine, Pavel V., Baker, Matthew L., Bunkóczi, Gábor, Chen, Vincent B., Croll, Tristan I., Hintze, Bradley, Hung, Li-Wei, Jain, Swati, McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Poon, Billy K., Prisant, Michael G., Read, Randy J., Richardson, Jane S., Richardson, David C., Sammito, Massimo D., Sobolev, Oleg V., Stockwell, Duncan H., Terwilliger, Thomas C., Urzhumtsev, Alexandre G., Videau, Lizbeth L., Williams, Christopher J., Adams, Paul D.

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Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality von van Zundert, Gydo C.P., Moriarty, Nigel W., Sobolev, Oleg V., Adams, Paul D., Borrelli, Kenneth W.

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Accounting for nonuniformity of bulk‐solvent: A mosaic model von Afonine, Pavel V., Adams, Paul D., Sobolev, Oleg V., Urzhumtsev, Alexandre G.

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PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology von Westbrook, John D., Young, Jasmine Y., Shao, Chenghua, Feng, Zukang, Guranovic, Vladimir, Lawson, Catherine L., Vallat, Brinda, Adams, Paul D., Berrisford, John M, Bricogne, Gerard, Diederichs, Kay, Joosten, Robbie P., Keller, Peter, Moriarty, Nigel W., Sobolev, Oleg V., Velankar, Sameer, Vonrhein, Clemens, Waterman, David G., Kurisu, Genji, Berman, Helen M., Burley, Stephen K., Peisach, Ezra

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Density modification of cryo‐EM maps von Terwilliger, Thomas C., Sobolev, Oleg V., Afonine, Pavel V., Adams, Paul D., Read, Randy J.

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Overall protein structure quality assessment using hydrogen‐bonding parameters von Afonine, Pavel V., Sobolev, Oleg V., Moriarty, Nigel W., Terwilliger, Thomas C., Adams, Paul D.

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Protein identification from electron cryomicroscopy maps by automated model building and side‐chain matching von Terwilliger, Thomas C., Sobolev, Oleg V., Afonine, Pavel V., Adams, Paul D., Ho, Chi-Min, Li, Xiaorun, Zhou, Z. Hong

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Real‐space quantum‐based refinement for cryo‐EM: Q|R#3 von Wang, Lum, Kruse, Holger, Sobolev, Oleg V., Moriarty, Nigel W., Waller, Mark P., Afonine, Pavel V., Biczysko, Malgorzata

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Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB) von Adams, Paul D., Afonine, Pavel V., Baskaran, Kumaran, Berman, Helen M., Berrisford, John, Bricogne, Gerard, Brown, David G., Burley, Stephen K., Chen, Minyu, Feng, Zukang, Flensburg, Claus, Gutmanas, Aleksandras, Hoch, Jeffrey C., Ikegawa, Yasuyo, Kengaku, Yumiko, Krissinel, Eugene, Kurisu, Genji, Liang, Yuhe, Liebschner, Dorothee, Mak, Lora, Markley, John L., Moriarty, Nigel W., Murshudov, Garib N., Noble, Martin, Peisach, Ezra, Persikova, Irina, Poon, Billy K., Sobolev, Oleg V., Ulrich, Eldon L., Velankar, Sameer, Vonrhein, Clemens, Westbrook, John, Wojdyr, Marcin, Yokochi, Masashi, Young, Jasmine Y.

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Detection of alternative conformations: Shift_plot and AC_prediction programs von Sobolev, Oleg V.

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Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge von Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.

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