Fossil and genomic evidence constrains the timing of bison arrival in North America von Froese, Duane, Stiller, Mathias, Heintzman, Peter D., Reyes, Alberto V., Zazula, Grant D., Soares, André E. R., Meyer, Matthias, Hall, Elizabeth, Jensen, Britta J. L., Arnold, Lee J., MacPhee, Ross D. E., Shapiro, Beth

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Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation von Soares, André E R, Novak, Ben J, Haile, James, Heupink, Tim H, Fjeldså, Jon, Gilbert, M Thomas P, Poinar, Hendrik, Church, George M, Shapiro, Beth

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Comparative genomics of MRSA strains from human and canine origins reveals similar virulence gene repertoire von Penna, Bruno, Silva, Marcella B., Soares, André E. R., Vasconcelos, Ana T. R., Ramundo, Mariana S., Ferreira, Fabienne A., Silva-Carvalho, Maria C., de Sousa, Viviane S., Rabello, Renata F., Bandeira, Paula T., de Souza, Viviane S., Planet, Paul J., Vieira-da-Motta, Olney, Botelho, Ana M. N., Figueiredo, Agnes M. S.

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Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada von Heintzman, Peter D., Froese, Duane, Ives, John W., Soares, André E. R., Zazula, Grant D., Letts, Brandon, Andrews, Thomas D., Driver, Jonathan C., Hall, Elizabeth, Hare, P. Gregory, Jass, Christopher N., MacKay, Glen, Southon, John R., Stiller, Mathias, Woywitka, Robin, Suchard, Marc A., Shapiro, Beth

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Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe von Fregel, Rosa, Méndez, Fernando L., Bokbot, Youssef, Martín-Socas, Dimas, Camalich-Massieu, María D., Santana, Jonathan, Morales, Jacob, Ávila-Arcos, María C., Underhill, Peter A., Shapiro, Beth, Wojcik, Genevieve, Rasmussen, Morten, Soares, André E. R., Kapp, Joshua, Sockell, Alexandra, Rodríguez-Santos, Francisco J., Mikdad, Abdeslam, Trujillo-Mederos, Aioze, Bustamante, Carlos D.

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Natural selection shaped the rise and fall of passenger pigeon genomic diversity von Murray, Gemma G. R., Soares, André E. R., Novak, Ben J., Schaefer, Nathan K., Cahill, James A., Baker, Allan J., Demboski, John R., Doll, Andrew, Da Fonseca, Rute R., Fulton, Tara L., Gilbert, M. Thomas P., Heintzman, Peter D., Letts, Brandon, McIntosh, George, O’Connell, Brendan L., Peck, Mark, Pipes, Marie-Lorraine, Rice, Edward S., Santos, Kathryn M., Sohrweide, A. Gregory, Vohr, Samuel H., Corbett-Detig, Russell B., Green, Richard E., Shapiro, Beth

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Demographic reconstruction of the Western sheep expansion from whole-genome sequences von Morell Miranda, Pedro, Soares, André E R, Günther, Torsten

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Parrot Genomes and the Evolution of Heightened Longevity and Cognition von Wirthlin, Morgan, Lima, Nicholas C.B., Guedes, Rafael Lucas Muniz, Soares, André E.R., Almeida, Luiz Gonzaga P., Cavaleiro, Nathalia P., Loss de Morais, Guilherme, Chaves, Anderson V., Howard, Jason T., Teixeira, Marcus de Melo, Schneider, Patricia N., Santos, Fabrício R., Schatz, Michael C., Felipe, Maria Sueli, Miyaki, Cristina Y., Aleixo, Alexandre, Schneider, Maria P.C., Jarvis, Erich D., Vasconcelos, Ana Tereza R., Prosdocimi, Francisco, Mello, Claudio V.

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Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data von Cahill, James A., Soares, André E. R., Green, Richard E., Shapiro, Beth

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Testing the genomic stability of the Brazilian yellow fever vaccine strain using next-generation sequencing data von Serrao de Andrade, Amanda Araujo, Soares, Andre E. R., Paula de Almeida, Luiz Gonzaga, Ciapina, Luciane Prioli, Pestana, Cristiane Pinheiro, Aquino, Carolina Lessa, Medeiros, Marco Alberto, Ribeiro de Vasconcelos, Ana Tereza

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Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission von Soares, André E. R, Soares, Marcelo A, Schrago, Carlos G

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Contemporary intergeneric hybridization and backcrossing among birds-of-paradise von Thörn, Filip, Soares, André E R, Müller, Ingo A, Päckert, Martin, Frahnert, Sylke, van Grouw, Hein, Kamminga, Pepijn, Peona, Valentina, Suh, Alexander, Blom, Mozes P K, Irestedt, Martin

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Ancient DNA: Methods and Protocols von Shapiro, Beth, Barlow, Axel, Heintzman, Peter D, Hofreiter, Michael, Paijmans, Johanna L. A, Soares, André E. R

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Hybridization Capture of Ancient DNA Using RNA Baits von Soares, André E. R.

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The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes von Soares, André E.R., Schrago, Carlos G.

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Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age von Cahill, James A, Heintzman, Peter D, Harris, Kelley, Teasdale, Matthew D, Kapp, Joshua, Soares, Andre E R, Stirling, Ian, Bradley, Daniel, Edwards, Ceiridwen J, Graim, Kiley, Kisleika, Aliaksandr A, Malev, Alexander V, Monaghan, Nigel, Green, Richard E, Shapiro, Beth

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The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages von Soares, André E.R., Schrago, Carlos G.

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Setting Up an Ancient DNA Laboratory von Fulton, Tara L., Shapiro, Beth

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Extraction of Highly Degraded DNA from Ancient Bones and Teeth von Dabney, Jesse, Meyer, Matthias

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Sampling and Extraction of Ancient DNA from Sediments von Epp, Laura S., Zimmermann, Heike H., Stoof-Leichsenring, Kathleen R.

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