Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight von Bühlmann, Andreas, Pothier, Joël F., Rezzonico, Fabio, Smits, Theo H.M., Andreou, Michael, Boonham, Neil, Duffy, Brion, Frey, Jürg E.

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Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities von Smits, Theo H.M, Devenoges, Christiane, Szynalski, Katia, Maillard, Julien, Holliger, Christof

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Evolutionary insights from Erwinia amylovora genomics von Smits, Theo H.M., Rezzonico, Fabio, Duffy, Brion

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Conservation tillage and organic farming induce minor variations in Pseudomonas abundance, their antimicrobial function and soil disease resistance von Dennert, Francesca, Imperiali, Nicola, Staub, Cornelia, Schneider, Jana, Laessle, Titouan, Zhang, Tao, Wittwer, Raphaël, van der Heijden, Marcel G A, Smits, Theo H M, Schlaeppi, Klaus, Keel, Christoph, Maurhofer, Monika

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Erwinia amylovora novel plasmid pEI70: complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen von Llop, Pablo, Cabrefiga, Jordi, Smits, Theo H M, Dreo, Tanja, Barbé, Silvia, Pulawska, Joanna, Bultreys, Alain, Blom, Jochen, Duffy, Brion, Montesinos, Emilio, López, María M

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Host-Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis von Gétaz, Michael, Puławska, Joanna, Smits, Theo H M, Pothier, Joël F

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Development of species-, strain- and antibiotic biosynthesis-specific quantitative PCR assays for Pantoea agglomerans as tools for biocontrol monitoring von Braun-Kiewnick, Andrea, Lehmann, Andreas, Rezzonico, Fabio, Wend, Chris, Smits, Theo H.M., Duffy, Brion

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Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization von Brankatschk, Kerstin, Kamber, Tim, Pothier, Joël F., Duffy, Brion, Smits, Theo H. M.

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Genomic and phenotypic characterization of a nonpigmented variant of Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid pPag3 von Smits, Theo H.M, Rezzonico, Fabio, Pelludat, Cosima, Goesmann, Alexander, Frey, Jürg E, Duffy, Brion

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Sulfoacetate Is Degraded via a Novel Pathway Involving Sulfoacetyl-CoA and Sulfoacetaldehyde in Cupriavidus necator H16 von Weinitschke, Sonja, Hollemeyer, Klaus, Kusian, Bernhard, Bowien, Botho, Smits, Theo H.M., Cook, Alasdair M.

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Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugat... von Mann, Rachel A., Blom, Jochen, Bühlmann, Andreas, Plummer, Kim M., Beer, Steven V., Luck, Joanne E., Goesmann, Alexander, Frey, Jürg E., Rodoni, Brendan C., Duffy, Brion, Smits, Theo H.M.

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Pseudomonas tructae sp. nov., novel species isolated from rainbow trout kidney von Oh, Woo Taek, Jun, Jin Woo, Giri, Sib Sankar, Yun, Saekil, Kim, Hyoun Joong, Kim, Sang Guen, Kim, Sang Wha, Kang, Jeong Woo, Han, Se Jin, Kwon, Jun, Kim, Ji Hyung, Smits, Theo H.M., Park, Se Chang

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The importance of genome sequence quality to microbial comparative genomics von Smits, Theo H M

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Microbial diversity in different compartments of an aquaponics system von Schmautz, Zala, Graber, Andreas, Jaenicke, Sebastian, Goesmann, Alexander, Junge, Ranka, Smits, Theo H. M.

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Roseovarius sp. strain 217: aerobic taurine dissimilation via acetate kinase and acetate-CoA ligase von Baldock, Marijke I, Denger, Karin, Smits, Theo H.M, Cook, Alasdair M

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Nitrogen transformations across compartments of an aquaponic system von Schmautz, Zala, Espinal, Carlos A., Smits, Theo H.M., Frossard, Emmanuel, Junge, Ranka

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Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora von REZZONICO, Fabio, SMITS, Theo H. M, DUFFY, Brion

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Microbial communities in floodplain ecosystems in relation to altered flow regimes and experimental flooding von Doering, Michael, Freimann, Remo, Antenen, Nadine, Roschi, Alexia, Robinson, Christopher T., Rezzonico, Fabio, Smits, Theo H.M., Tonolla, Diego

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Microbial diversity across compartments in an aquaponic system and its connection to the nitrogen cycle von Schmautz, Zala, Walser, Jean-Claude, Espinal, Carlos A., Gartmann, Florentina, Scott, Ben, Pothier, Joël F., Frossard, Emmanuel, Junge, Ranka, Smits, Theo H.M.

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Pantocin A, a peptide-derived antibiotic involved in biological control by plant-associated Pantoea species von Smits, Theo H. M., Duffy, Brion, Blom, Jochen, Ishimaru, Carol A., Stockwell, Virginia O.

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