Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation von Banerjee, Amrita, Herring, Charles A., Chen, Bob, Kim, Hyeyon, Simmons, Alan J., Southard-Smith, Austin N., Allaman, Margaret M., White, James R., Macedonia, Mary C., Mckinley, Eliot T., Ramirez-Solano, Marisol A., Scoville, Elizabeth A., Liu, Qi, Wilson, Keith T., Coffey, Robert J., Washington, M. Kay, Goettel, Jeremy A., Lau, Ken S.

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The Integrin Pathway Partially Mediates Stretch-Induced Deficits in Primary Rat Microglia von Shaughness, Michael C., Pierron, Nathan, Smith, Austin N., Byrnes, Kimberly R.

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Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ von May-Zhang, Aaron A., Tycksen, Eric, Southard-Smith, Austin N., Deal, Karen K., Benthal, Joseph T., Buehler, Dennis P., Adam, Mike, Simmons, Alan J., Monaghan, James R., Matlock, Brittany K., Flaherty, David K., Potter, S. Steven, Lau, Ken S., Southard-Smith, E. Michelle

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An interspecies translation model implicates integrin signaling in infliximab-resistant inflammatory bowel disease von Brubaker, Douglas K, Kumar, Manu P, Chiswick, Evan L, Gregg, Cecil, Starchenko, Alina, Vega, Paige N, Southard-Smith, Austin N, Simmons, Alan J, Scoville, Elizabeth A, Coburn, Lori A, Wilson, Keith T, Lau, Ken S, Lauffenburger, Douglas A

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Therapeutic targeting of microglia mediated oxidative stress after neurotrauma von Smith, Austin N., Shaughness, Michael, Collier, Sean, Hopkins, Deanna, Byrnes, Kimberly R.

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Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms von Southard-Smith, Austin N, Simmons, Alan J, Chen, Bob, Jones, Angela L, Ramirez Solano, Marisol A, Vega, Paige N, Scurrah, Cherie' R, Zhao, Yue, Brenan, Michael J, Xuan, Jiekun, Shrubsole, Martha J, Porter, Ely B, Chen, Xi, Brenan, Colin J H, Liu, Qi, Quigley, Lauren N M, Lau, Ken S

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Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps von Chen, Bob, Scurrah, Cherie’ R., McKinley, Eliot T., Simmons, Alan J., Ramirez-Solano, Marisol A., Zhu, Xiangzhu, Markham, Nicholas O., Heiser, Cody N., Vega, Paige N., Rolong, Andrea, Kim, Hyeyon, Sheng, Quanhu, Drewes, Julia L., Zhou, Yuan, Southard-Smith, Austin N., Xu, Yanwen, Ro, James, Jones, Angela L., Revetta, Frank, Berry, Lynne D., Niitsu, Hiroaki, Islam, Mirazul, Pelka, Karin, Hofree, Matan, Chen, Jonathan H., Sarkizova, Siranush, Ng, Kimmie, Giannakis, Marios, Boland, Genevieve M., Aguirre, Andrew J., Anderson, Ana C., Rozenblatt-Rosen, Orit, Regev, Aviv, Hacohen, Nir, Kawasaki, Kenta, Sato, Toshiro, Goettel, Jeremy A., Grady, William M., Zheng, Wei, Washington, M. Kay, Cai, Qiuyin, Sears, Cynthia L., Goldenring, James R., Franklin, Jeffrey L., Su, Timothy, Huh, Won Jae, Vandekar, Simon, Roland, Joseph T., Liu, Qi, Coffey, Robert J., Shrubsole, Martha J., Lau, Ken S.

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A contamination focused approach for optimizing the single-cell RNA-seq experiment von Arceneaux, Deronisha, Chen, Zhengyi, Simmons, Alan J., Heiser, Cody N., Southard-Smith, Austin N., Brenan, Michael J., Yang, Yilin, Chen, Bob, Xu, Yanwen, Choi, Eunyoung, Campbell, Joshua D., Liu, Qi, Lau, Ken S.

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Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer von Cui Zhou, Daniel, Jayasinghe, Reyka G., Chen, Siqi, Herndon, John M., Iglesia, Michael D., Navale, Pooja, Wendl, Michael C., Caravan, Wagma, Sato, Kazuhito, Storrs, Erik, Mo, Chia-Kuei, Liu, Jingxian, Southard-Smith, Austin N., Wu, Yige, Naser Al Deen, Nataly, Baer, John M., Fulton, Robert S., Wyczalkowski, Matthew A., Liu, Ruiyang, Fronick, Catrina C., Fulton, Lucinda A., Shinkle, Andrew, Thammavong, Lisa, Zhu, Houxiang, Sun, Hua, Wang, Liang-Bo, Li, Yize, Zuo, Chong, McMichael, Joshua F., Davies, Sherri R., Appelbaum, Elizabeth L., Robbins, Keenan J., Chasnoff, Sara E., Yang, Xiaolu, Reeb, Ashley N., Oh, Clara, Serasanambati, Mamatha, Lal, Preet, Varghese, Rajees, Mashl, Jay R., Ponce, Jennifer, Terekhanova, Nadezhda V., Yao, Lijun, Wang, Fang, Chen, Lijun, Schnaubelt, Michael, Lu, Rita Jui-Hsien, Schwarz, Julie K., Puram, Sidharth V., Kim, Albert H., Song, Sheng-Kwei, Shoghi, Kooresh I., Lau, Ken S., Ju, Tao, Chen, Ken, Chatterjee, Deyali, Hawkins, William G., Zhang, Hui, Achilefu, Samuel, Chheda, Milan G., Oh, Stephen T., Gillanders, William E., Chen, Feng, DeNardo, David G., Fields, Ryan C., Ding, Li

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Downregulation of Fidgetin-Like 2 Increases Microglial Function: The Relationship Between Microtubules, Morphology, and Activity von Smith, Austin N, Gregor, Alison, Baker, Lisa, Sharp, David J, Byrnes, Kimberly R

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Matrix stiffness enhances cancer-macrophage interactions and M2-like macrophage accumulation in the breast tumor microenvironment von Taufalele, Paul V., Wang, Wenjun, Simmons, Alan J., Southard-Smith, Austin N., Chen, Bob, Greenlee, Joshua D., King, Michael R., Lau, Ken S., Hassane, Duane C., Bordeleau, François, Reinhart-King, Cynthia A.

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Epigenetic regulation during cancer transitions across 11 tumour types von Terekhanova, Nadezhda V., Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N., Iglesia, Michael D., Wendl, Michael C., Jayasinghe, Reyka G., Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Matthew A., Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M., Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar M., Mo, Chia-Kuei, Chasnoff, Sara E., Porta-Pardo, Eduard, Held, Jason M., Pachynski, Russell, Schwarz, Julie K., Gillanders, William E., Kim, Albert H., Vij, Ravi, DiPersio, John F., Puram, Sidharth V., Chheda, Milan G., Fuh, Katherine C., DeNardo, David G., Fields, Ryan C., Chen, Feng, Raphael, Benjamin J., Ding, Li

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Coregulator Sin3a Promotes Postnatal Murine β-Cell Fitness by Regulating Genes in Ca2+ Homeostasis, Cell Survival, Vesicle Biosynthesis, Glucose Metabolism, and Stress Response von Yang, Xiaodun, Graff, Sarah M., Heiser, Cody N., Ho, Kung-Hsien, Chen, Bob, Simmons, Alan J., Southard-Smith, Austin N., David, Gregory, Jacobson, David A., Kaverina, Irina, Wright, Christopher V.E., Lau, Ken S., Gu, Guoqiang

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Tumour evolution and microenvironment interactions in 2D and 3D space von Mo, Chia-Kuei, Liu, Jingxian, Chen, Siqi, Storrs, Erik, Targino da Costa, Andre Luiz N., Houston, Andrew, Wendl, Michael C., Jayasinghe, Reyka G., Iglesia, Michael D., Ma, Cong, Herndon, John M., Southard-Smith, Austin N., Liu, Xinhao, Mudd, Jacqueline, Karpova, Alla, Shinkle, Andrew, Goedegebuure, S. Peter, Abdelzaher, Abdurrahman Taha Mousa Ali, Bo, Peng, Fulghum, Lauren, Livingston, Samantha, Balaban, Metin, Hill, Angela, Ippolito, Joseph E., Thorsson, Vesteinn, Held, Jason M., Hagemann, Ian S., Kim, Eric H., Bayguinov, Peter O., Kim, Albert H., Mullen, Mary M., Shoghi, Kooresh I., Ju, Tao, Reimers, Melissa A., Weimholt, Cody, Kang, Liang-I, Puram, Sidharth V., Veis, Deborah J., Pachynski, Russell, Fuh, Katherine C., Chheda, Milan G., Gillanders, William E., Fields, Ryan C., Raphael, Benjamin J., Chen, Feng, Ding, Li

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Multi-scale signaling and tumor evolution in high-grade gliomas von Liu, Jingxian, Cao, Song, Imbach, Kathleen J., Gritsenko, Marina A., Lih, Tung-Shing M., Kyle, Jennifer E., Yaron-Barir, Tomer M., Binder, Zev A., Li, Yize, Strunilin, Ilya, Wang, Yi-Ting, Tsai, Chia-Feng, Ma, Weiping, Chen, Lijun, Clark, Natalie M., Shinkle, Andrew, Naser Al Deen, Nataly, Caravan, Wagma, Houston, Andrew, Simin, Faria Anjum, Wyczalkowski, Matthew A., Wang, Liang-Bo, Storrs, Erik, Chen, Siqi, Illindala, Ritvik, Li, Yuping D., Jayasinghe, Reyka G., Rykunov, Dmitry, Cottingham, Sandra L., Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Sagendorf, Tyler, Petyuk, Vladislav A., Nestor, Michael, Bramer, Lisa M., Stratton, Kelly G., Schepmoes, Athena A., Couvillion, Sneha P., Eder, Josie, Kim, Young-Mo, Gao, Yuqian, Fillmore, Thomas L., Zhao, Rui, Monroe, Matthew E., Southard-Smith, Austin N., Li, Yang E., Jui-Hsien Lu, Rita, Johnson, Jared L., Wiznerowicz, Maciej, Hostetter, Galen, Newton, Chelsea J., Ketchum, Karen A., Thangudu, Ratna R., Barnholtz-Sloan, Jill S., Wang, Pei, Fenyö, David, An, Eunkyung, Thiagarajan, Mathangi, Robles, Ana I., Mani, D.R., Smith, Richard D., Porta-Pardo, Eduard, Cantley, Lewis C., Iavarone, Antonio, Chen, Feng, Mesri, Mehdi, Nasrallah, MacLean P., Zhang, Hui, Resnick, Adam C., Chheda, Milan G., Rodland, Karin D., Liu, Tao, Ding, Li

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Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages von Iglesia, Michael D., Jayasinghe, Reyka G., Chen, Siqi, Terekhanova, Nadezhda V., Herndon, John M., Storrs, Erik, Karpova, Alla, Zhou, Daniel Cui, Naser Al Deen, Nataly, Shinkle, Andrew T., Lu, Rita Jui-Hsien, Caravan, Wagma, Houston, Andrew, Zhao, Yanyan, Sato, Kazuhito, Lal, Preet, Street, Cherease, Martins Rodrigues, Fernanda, Southard-Smith, Austin N., Targino da Costa, André Luiz N., Zhu, Houxiang, Mo, Chia-Kuei, Crowson, Lisa, Fulton, Robert S., Wyczalkowski, Matthew A., Fronick, Catrina C., Fulton, Lucinda A., Sun, Hua, Davies, Sherri R., Appelbaum, Elizabeth L., Chasnoff, Sara E., Carmody, Madelyn, Brooks, Candace, Liu, Ruiyang, Wendl, Michael C., Oh, Clara, Bender, Diane, Cruchaga, Carlos, Harari, Oscar, Bredemeyer, Andrea, Lavine, Kory, Bose, Ron, Margenthaler, Julie, Held, Jason M., Achilefu, Samuel, Ademuyiwa, Foluso, Aft, Rebecca, Ma, Cynthia, Colditz, Graham A., Ju, Tao, Oh, Stephen T., Fitzpatrick, James, Hwang, E. Shelley, Shoghi, Kooresh I., Chheda, Milan G., Veis, Deborah J., Chen, Feng, Fields, Ryan C., Gillanders, William E., Ding, Li

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Coregulator Sin3a Promotes Postnatal Murine β-Cell Fitness by Regulating Genes in Ca 2+ Homeostasis, Cell Survival, Vesicle Biosynthesis, Glucose Metabolism, and Stress Response von Yang, Xiaodun, Graff, Sarah M, Heiser, Cody N, Ho, Kung-Hsien, Chen, Bob, Simmons, Alan J, Southard-Smith, Austin N, David, Gregory, Jacobson, David A, Kaverina, Irina, Wright, Christopher V E, Lau, Ken S, Gu, Guoqiang

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Epigenetic regulation during cancer transitions across 11 tumour types von Terekhanova, Nadezhda V, Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N, Iglesia, Michael D, Wendl, Michael C, Jayasinghe, Reyka G, Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Michael A, Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M, Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar.M, Mo, Chia-Kuei, Chasnoff, Sara E, Porta-Pardo, Eduard, Held, Jasson M, Pachynski, Russell, Schwarz, Julie K, Gillanders, William E, Kim, Albert H, Vij, Ravi, DiPersio, John, Puram, Sidharth V, Chheda, Milan G, Fuh, Katherine C, DeNardo, David G, Fields, Ryan C, Chen, Feng, Raphael, Benjamin J, Ding, Li

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Multi-scale signaling and tumor evolution in high-grade gliomas (CPTAC-Glioblastoma-CODEX) von Liu, Jingxian, Cao, Song, Imbach, Kathleen J., Gritsenko, Marina A., Lih, Tung-Shing M., Kyle, Jennifer E., Yaron, Tomer M., Binder, Zev A., Li, Yize, Strunilin, Ilya, Wang, Yi-Ting, Tsai, Chia-Feng, Ma, Weiping, Chen, Lijun, Clark, Natalie M., Shinkle, Andrew, Naser Al Deen, Nataly, Caravan, Wagma, Houston, Andrew, Simin, Faria A., Wyczalkowski, Matthew A., Wang, Liang-Bo, Storrs, Erik, Chen, Siqi, Illindala, Ritvik, Li, Yuping D., Jayasinghe, Reyka G., Rykunov, Dmitry, Cottingham, Sandra L., Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Sagendorf, Tyler, Petyuk, Vladislav A., Nestor, Michael, Bramer, Lisa M., Stratton, Kelly G., Schepmoes, Athena A., Couvillion, Sneha P., Eder, Josie, Kim, Young-Mo, Gao, Yuqian, Fillmore, Thomas L., Zhao, Rui, Monroe, Matthew E., Southard-Smith, Austin N., Li, Yang E., Lu, Rita Jui-Hsien, Johnson, Jared L., Wiznerowicz, Maciej, Hostetter, Galen, Newton, Chelsea J., Ketchum, Karen A., Thangudu, Ratna R., Barnholtz-Sloan, Jill S., Wang, Pei, Fenyö, David, An, Eunkyung, Thiagarajan, Mathangi, Robles, Ana I., Mani, D. R., Smith, Richard D., Porta-Pardo, Eduard, Cantley, Lewis C., Iavarone, Antonio, Chen, Feng, Mesri, Mehdi, Nasrallah, MacLean P., Zhang, Hui, Resnick, Adam C., Chheda, Milan G., Rodland, Karin D., Liu, Tao, Ding, Li

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Additional file 4 of Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms von Southard-Smith, Austin N., Simmons, Alan J., Chen, Bob, Jones, Angela L., Solano, Marisol A. Ramirez, Vega, Paige N., Cherie’ R. Scurrah, Zhao, Yue, Brenan, Michael J., Jiekun Xuan, Shrubsole, Martha J., Ely B. Porter, Chen, Xi, Brenan, Colin J. H., Liu, Qi, Quigley, Lauren N. M., Lau, Ken S.

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