Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics von Tu, Chengjian, Rudnick, Paul A, Martinez, Misti Y, Cheek, Kristin L, Stein, Stephen E, Slebos, Robbert J. C, Liebler, Daniel C

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Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data von Wang, Xiaojing, Slebos, Robbert J. C, Wang, Dong, Halvey, Patrick J, Tabb, David L, Liebler, Daniel C, Zhang, Bing

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Virtual alignment of pathology image series for multi-gigapixel whole slide images von Gatenbee, Chandler D., Baker, Ann-Marie, Prabhakaran, Sandhya, Swinyard, Ottilie, Slebos, Robbert J. C., Mandal, Gunjan, Mulholland, Eoghan, Andor, Noemi, Marusyk, Andriy, Leedham, Simon, Conejo-Garcia, Jose R., Chung, Christine H., Robertson-Tessi, Mark, Graham, Trevor A., Anderson, Alexander R. A.

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Identification of Proteomic Features To Distinguish Benign Pulmonary Nodules from Lung Adenocarcinoma von Codreanu, Simona G, Hoeksema, Megan D, Slebos, Robbert J. C, Zimmerman, Lisa J, Rahman, S. M. Jamshedur, Li, Ming, Chen, Sheau-Chiann, Chen, Heidi, Eisenberg, Rosana, Liebler, Daniel C, Massion, Pierre P

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lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA von Li, Qian, Yu, Xiaoqing, Chaudhary, Ritu, Slebos, Robbert J C, Chung, Christine H, Wang, Xuefeng

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Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling von Li, Ming, Gray, William, Zhang, Haixia, Chung, Christine H, Billheimer, Dean, Yarbrough, Wendell G, Liebler, Daniel C, Shyr, Yu, Slebos, Robbert J. C

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Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells von Le, Anne, Lane, Andrew N., Hamaker, Max, Bose, Sminu, Gouw, Arvin, Barbi, Joseph, Tsukamoto, Takashi, Rojas, Camilio J., Slusher, Barbara S., Zhang, Haixia, Zimmerman, Lisa J., Liebler, Daniel C., Slebos, Robbert J.C., Lorkiewicz, Pawel K., Higashi, Richard M., Fan, Teresa W.M., Dang, Chi V.

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Proteomic analysis of oropharyngeal carcinomas reveals novel HPV‐associated biological pathways von Slebos, Robbert J.C., Jehmlich, Nico, Brown, Brandee, Yin, Zhirong, Chung, Christine H., Yarbrough, Wendell G., Liebler, Daniel C.

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Proteogenomic landscape of squamous cell lung cancer von Stewart, Paul A., Welsh, Eric A., Slebos, Robbert J. C., Fang, Bin, Izumi, Victoria, Chambers, Matthew, Zhang, Guolin, Cen, Ling, Pettersson, Fredrik, Zhang, Yonghong, Chen, Zhihua, Cheng, Chia-Ho, Thapa, Ram, Thompson, Zachary, Fellows, Katherine M., Francis, Jewel M., Saller, James J., Mesa, Tania, Zhang, Chaomei, Yoder, Sean, DeNicola, Gina M., Beg, Amer A., Boyle, Theresa A., Teer, Jamie K., Ann Chen, Yian, Koomen, John M., Eschrich, Steven A., Haura, Eric B.

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Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer von Hutton, Josiah E., Wang, Xiaojing, Zimmerman, Lisa J., Slebos, Robbert J.C., Trenary, Irina A., Young, Jamey D., Li, Ming, Liebler, Daniel C.

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Increased Epidermal Growth Factor Receptor Gene Copy Number Is Associated With Poor Prognosis in Head and Neck Squamous Cell Carcinomas von CHUNG, Christine H, ELY, Kim, BURKEY, Brian B, SINARD, Robert, CMELAK, Anthony, LEVY, Shawn, YARBROUGH, Wendell G, SLEBOS, Robbert J. C, HIRSCH, Fred R, MCGAVRAN, Loris, VARELLA-GARCIA, Marileila, PARKER, Joel, PARKER, Natalie, JARRETT, Carolyn, CARTER, Jesse, MURPHY, Barbara A, NETTERVILLE, Fames

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Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Prote... von Sprung, Robert W., Brock, Jonathan W.C., Tanksley, Jarred P., Li, Ming, Washington, Mary Kay, Slebos, Robbert J.C., Liebler, Daniel C.

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Comparison of Protein Immunoprecipitation-Multiple Reaction Monitoring with ELISA for Assay of Biomarker Candidates in Plasma von Lin, De, Alborn, William E, Slebos, Robbert J. C, Liebler, Daniel C

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Histoecology: Applying Ecological Principles and Approaches to Describe and Predict Tumor Ecosystem Dynamics Across Space and Time von Gatenbee, Chandler D., Minor, Emily S., Slebos, Robbert J. C., Chung, Christine H., Anderson, Alexander R. A.

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Quantitative analysis of CDX2 protein expression improves its clinical utility as a prognostic biomarker in stage II and III colon cancer von den Uil, Sjoerd H., de Wit, Meike, Slebos, Robbert J.C., Delis-van Diemen, Pien M., Sanders, Joyce, Piersma, Sander R., Pham, Thang V., Coupé, Veerle M.H., Bril, Herman, Stockmann, Hein B.A.C., Jimenez, Connie R., Meijer, Gerrit A., Fijneman, Remond J.A.

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Proteogenomic Analysis Reveals Unanticipated Adaptations of Colorectal Tumor Cells to Deficiencies in DNA Mismatch Repair von HALVEY, Patrick J, XIAOJING WANG, JING WANG, BHAT, Ajaz A, DHAWAN, Punita, MING LI, BING ZHANG, LIEBLER, Daniel C, SLEBOS, Robbert J. C

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Deep Learning of Histopathology Images at the Single Cell Level von Lee, Kyubum, Lockhart, John H, Xie, Mengyu, Chaudhary, Ritu, Slebos, Robbert J C, Flores, Elsa R, Chung, Christine H, Tan, Aik Choon

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A Bioinformatics Workflow for Variant Peptide Detection in Shotgun Proteomics von Li, Jing, Su, Zengliu, Ma, Ze-Qiang, Slebos, Robbert J.C., Halvey, Patrick, Tabb, David L., Liebler, Daniel C., Pao, William, Zhang, Bing

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Gene Expression Differences Associated with Human Papillomavirus Status in Head and Neck Squamous Cell Carcinoma von SLEBOS, Robbert J. C, YAJUN YI, NETTERVILLE, James L, LEVY, Shawn, YARBROUGH, Wendell G, CHUNG, Christine H, ELY, Kim, CARTER, Jesse, EVJEN, Amy, XUEQIONG ZHANG, SHYR, Yu, MURPHY, Barbara M, CMELAK, Anthony J, BURKEY, Brian B

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Proteomic Consequences of a Single Gene Mutation in a Colorectal Cancer Model von Halvey, Patrick J, Zhang, Bing, Coffey, Robert J, Liebler, Daniel C, Slebos, Robbert J. C

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