An extensive evaluation of read trimming effects on Illumina NGS data analysis von Del Fabbro, Cristian, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M

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Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach von Falchi, Rachele, Vendramin, Elisa, Zanon, Laura, Scalabrin, Simone, Cipriani, Guido, Verde, Ignazio, Vizzotto, Giannina, Morgante, Michele

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A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm von Scalabrin, Simone, Toniutti, Lucile, Di Gaspero, Gabriele, Scaglione, Davide, Magris, Gabriele, Vidotto, Michele, Pinosio, Sara, Cattonaro, Federica, Magni, Federica, Jurman, Irena, Cerutti, Mario, Suggi Liverani, Furio, Navarini, Luciano, Del Terra, Lorenzo, Pellegrino, Gloria, Ruosi, Manuela Rosanna, Vitulo, Nicola, Valle, Giorgio, Pallavicini, Alberto, Graziosi, Giorgio, Klein, Patricia E., Bentley, Nolan, Murray, Seth, Solano, William, Al Hakimi, Amin, Schilling, Timothy, Montagnon, Christophe, Morgante, Michele, Bertrand, Benoit

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Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize von Scaglione, Davide, Pinosio, Sara, Marroni, Fabio, Di Centa, Eleonora, Fornasiero, Alice, Magris, Gabriele, Scalabrin, Simone, Cattonaro, Federica, Taylor, Gail, Morgante, Michele

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Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties von Venuti, Silvia, Copetti, Dario, Foria, Serena, Falginella, Luigi, Hoffmann, Sarolta, Bellin, Diana, Cindrić, Petar, Kozma, Pál, Scalabrin, Simone, Morgante, Michele, Testolin, Raffaele, Di Gaspero, Gabriele

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A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm von Scalabrin, Simone, Magris, Gabriele, Liva, Mario, Vitulo, Nicola, Vidotto, Michele, Scaglione, Davide, Del Terra, Lorenzo, Ruosi, Manuela Rosanna, Navarini, Luciano, Pellegrino, Gloria, Berny Mier y Teran, Jorge Carlos, Toniutti, Lucile, Suggi Liverani, Furio, Cerutti, Mario, Di Gaspero, Gabriele, Morgante, Michele

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A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach von Vendramin, Elisa, Pea, Giorgio, Dondini, Luca, Pacheco, Igor, Dettori, Maria Teresa, Gazza, Laura, Scalabrin, Simone, Strozzi, Francesco, Tartarini, Stefano, Bassi, Daniele, Verde, Ignazio, Rossini, Laura

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Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm von Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T, Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R, Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Aranzana, Maria José, Arús, Pere, Iezzoni, Amy, Morgante, Michele, Peace, Cameron, Wu, Rongling

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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution von Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi, Teycheney, Pierre-Yves

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Resilience of genetic diversity in forest trees over the Quaternary von Milesi, Pascal, Kastally, Chedly, Dauphin, Benjamin, Cervantes, Sandra, Bagnoli, Francesca, Budde, Katharina B., Cavers, Stephen, Fady, Bruno, Faivre-Rampant, Patricia, González-Martínez, Santiago C., Grivet, Delphine, Gugerli, Felix, Jorge, Véronique, Lesur Kupin, Isabelle, Ojeda, Dario I., Olsson, Sanna, Opgenoorth, Lars, Pinosio, Sara, Plomion, Christophe, Rellstab, Christian, Rogier, Odile, Scalabrin, Simone, Scotti, Ivan, Vendramin, Giovanni G., Westergren, Marjana, Lascoux, Martin, Pyhäjärvi, Tanja

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The functional capacity of plantaricin-producing Lactobacillus plantarum SF9C and S-layer-carrying Lactobacillus brevis SF9B to withstand gastrointestinal transit von Butorac, Katarina, Banić, Martina, Novak, Jasna, Leboš Pavunc, Andreja, Uroić, Ksenija, Durgo, Ksenija, Oršolić, Nada, Kukolj, Marina, Radović, Slobodanka, Scalabrin, Simone, Žučko, Jurica, Starčević, Antonio, Šušković, Jagoda, Kos, Blaženka

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Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra von Wildhagen, Henning, Paul, Shanty, Allwright, Mike, Smith, Hazel K, Malinowska, Marta, Schnabel, Sabine K, Paulo, M João, Cattonaro, Federica, Vendramin, Vera, Scalabrin, Simone, Janz, Dennis, Douthe, Cyril, Brendel, Oliver, Buré, Cyril, Cohen, David, Hummel, Irène, Le Thiec, Didier, van Eeuwijk, Fred, Keurentjes, Joost J B, Flexas, Jaume, Morgante, Michele, Robson, Paul, Bogeat-Triboulot, Marie-Béatrice, Taylor, Gail, Polle, Andrea

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Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm von Vendramin, Vera, Ormanbekova, Danara, Scalabrin, Simone, Scaglione, Davide, Maccaferri, Marco, Martelli, Pierluigi, Salvi, Silvio, Jurman, Irena, Casadio, Rita, Cattonaro, Federica, Tuberosa, Roberto, Massi, Andrea, Morgante, Michele

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Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker von Mariotti, Roberto, Fornasiero, Alice, Mousavi, Soraya, Cultrera, Nicolò G M, Brizioli, Federico, Pandolfi, Saverio, Passeri, Valentina, Rossi, Martina, Magris, Gabriele, Scalabrin, Simone, Scaglione, Davide, Di Gaspero, Gabriele, Saumitou-Laprade, Pierre, Vernet, Philippe, Alagna, Fiammetta, Morgante, Michele, Baldoni, Luciana

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Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of 'Lito' Chromosome 1 and Analysis of Candidate Genes von De Mori, Gloria, Falchi, Rachele, Testolin, Raffaele, Bassi, Daniele, Savazzini, Federica, Dondini, Luca, Tartarini, Stefano, Palmisano, Francesco, Minafra, Angelantonio, Spadotto, Alessandro, Scalabrin, Simone, Geuna, Filippo

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A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat von Rustenholz, Camille, Choulet, Frédéric, Laugier, Christel, Šafář, Jan, Šimková, Hana, Doležel, Jaroslav, Magni, Federica, Scalabrin, Simone, Cattonaro, Federica, Vautrin, Sonia, Bellec, Arnaud, Bergès, Hélène, Feuillet, Catherine, Paux, Etienne

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Mapping and sequencing complex genomes: let's get physical von Morgante, Michele, Meyers, Blake C, Scalabrin, Simone

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A physical map of the short arm of wheat chromosome 1A von Breen, James, Wicker, Thomas, Shatalina, Margarita, Frenkel, Zeev, Bertin, Isabelle, Philippe, Romain, Spielmeyer, Wolfgang, Simková, Hana, Safář, Jan, Cattonaro, Federica, Scalabrin, Simone, Magni, Federica, Vautrin, Sonia, Bergès, Hélène, Paux, Etienne, Fahima, Tzion, Doležel, Jaroslav, Korol, Abraham, Feuillet, Catherine, Keller, Beat

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Genotypic and tissue-specific variation of Populus nigra transcriptome profiles in response to drought von Eckert, Christian, Wildhagen, Henning, Paulo, Maria João, Scalabrin, Simone, Ballauff, Johannes, Schnabel, Sabine K., Vendramin, Vera, Keurentjes, Joost J. B., Bogeat-Triboulot, Marie-Béatrice, Taylor, Gail, Polle, Andrea

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Wnt-mediated Down-regulation of Sp1 Target Genes by a Transcriptional Repressor Sp5 von Fujimura, Naoko, Vacik, Tomas, Machon, Ondrej, Vlcek, Cestmir, Scalabrin, Simone, Speth, Martin, Diep, Dzung, Krauss, Stefan, Kozmik, Zbynek

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